Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00001
(615 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 118 3e-27
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 118 3e-27
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 46 2e-05
AL023815-2|CAD92383.1| 146|Caenorhabditis elegans Hypothetical ... 46 2e-05
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 33 0.16
Z70266-6|CAD57691.1| 795|Caenorhabditis elegans Hypothetical pr... 31 0.65
Z70266-5|CAA94208.1| 798|Caenorhabditis elegans Hypothetical pr... 31 0.65
AL023827-4|CAD57709.1| 795|Caenorhabditis elegans Hypothetical ... 31 0.65
AL023827-3|CAA19446.1| 798|Caenorhabditis elegans Hypothetical ... 31 0.65
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 30 1.1
U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protei... 30 1.5
U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protei... 30 1.5
U28730-7|AAA68258.2| 665|Caenorhabditis elegans Abnormal cell l... 29 2.0
AF275253-1|AAG28037.1| 665|Caenorhabditis elegans LIN-23 protein. 29 2.0
U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical pr... 28 6.1
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu... 28 6.1
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein. 28 6.1
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr... 27 8.1
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p... 27 8.1
U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astaci... 27 8.1
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ... 27 8.1
AF016418-2|AAK18901.1| 893|Caenorhabditis elegans Hypothetical ... 27 8.1
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 118 bits (285), Expect = 3e-27
Identities = 72/137 (52%), Positives = 86/137 (62%), Gaps = 6/137 (4%)
Frame = +2
Query: 185 AEISTILEERILGAAPKADLEETXXXXXXXXXXXXXXX-----EEHPG*GDGGVLLRPQG 349
+E+S ILEERILG +LEET E D G+ +G
Sbjct: 7 SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGI----KG 62
Query: 350 NGLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGN-L*WQGTI 526
+NL+ DNVGVVVFGNDK+I+EGDIVKRTGAIVDVPVG+ +LGRVVDALGN + +G I
Sbjct: 63 MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 122
Query: 527 DTKSRMRVGIKAPGIIP 577
R RV +KAPGIIP
Sbjct: 123 ANARRSRVEVKAPGIIP 139
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/23 (86%), Positives = 22/23 (95%)
Frame = +3
Query: 291 YGLKNIQAEEMVEFSSGLKGMAL 359
YGLKNIQAEEMVEF SG+KGMA+
Sbjct: 43 YGLKNIQAEEMVEFDSGIKGMAM 65
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 118 bits (285), Expect = 3e-27
Identities = 72/137 (52%), Positives = 86/137 (62%), Gaps = 6/137 (4%)
Frame = +2
Query: 185 AEISTILEERILGAAPKADLEETXXXXXXXXXXXXXXX-----EEHPG*GDGGVLLRPQG 349
+E+S ILEERILG +LEET E D G+ +G
Sbjct: 34 SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGI----KG 89
Query: 350 NGLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGN-L*WQGTI 526
+NL+ DNVGVVVFGNDK+I+EGDIVKRTGAIVDVPVG+ +LGRVVDALGN + +G I
Sbjct: 90 MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 149
Query: 527 DTKSRMRVGIKAPGIIP 577
R RV +KAPGIIP
Sbjct: 150 ANARRSRVEVKAPGIIP 166
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/23 (86%), Positives = 22/23 (95%)
Frame = +3
Query: 291 YGLKNIQAEEMVEFSSGLKGMAL 359
YGLKNIQAEEMVEF SG+KGMA+
Sbjct: 70 YGLKNIQAEEMVEFDSGIKGMAM 92
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/23 (86%), Positives = 22/23 (95%)
Frame = +3
Query: 291 YGLKNIQAEEMVEFSSGLKGMAL 359
YGLKNIQAEEMVEF SG+KGMA+
Sbjct: 70 YGLKNIQAEEMVEFDSGIKGMAM 92
Score = 37.5 bits (83), Expect = 0.008
Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Frame = +2
Query: 185 AEISTILEERILGAAPKADLEET-----XXXXXXXXXXXXXXXEEHPG*GDGGVLLRPQG 349
+E+S ILEERILG +LEET E D G+ +G
Sbjct: 34 SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGI----KG 89
Query: 350 NGLNLEPDNVGVVVFGN 400
+NL+ DNVGVVV GN
Sbjct: 90 MAMNLDVDNVGVVVLGN 106
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 401 DKLIKEGDIVKRTGAIVDVP-VGEQILGRVVDALGNL*WQGTIDTKSRMRVGIKAPGIIP 577
+++++ +K +DV VG +LG +D +G I R RV +KAPGIIP
Sbjct: 78 EEMVEFDSGIKGMAMNLDVDNVGVVVLGNPIDG------KGPIANARRSRVEVKAPGIIP 131
>AL023815-2|CAD92383.1| 146|Caenorhabditis elegans Hypothetical
protein H28O16.1b protein.
Length = 146
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/23 (86%), Positives = 22/23 (95%)
Frame = +3
Query: 291 YGLKNIQAEEMVEFSSGLKGMAL 359
YGLKNIQAEEMVEF SG+KGMA+
Sbjct: 70 YGLKNIQAEEMVEFDSGIKGMAM 92
Score = 45.2 bits (102), Expect = 4e-05
Identities = 32/80 (40%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Frame = +2
Query: 185 AEISTILEERILGAAPKADLEETXXXXXXXXXXXXXXX-----EEHPG*GDGGVLLRPQG 349
+E+S ILEERILG +LEET E D G+ +G
Sbjct: 34 SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGI----KG 89
Query: 350 NGLNLEPDNVGVVVFGNDKL 409
+NL+ DNVGVVVFGNDK+
Sbjct: 90 MAMNLDVDNVGVVVFGNDKI 109
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +2
Query: 383 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGN-L*WQGTIDTKSRMRVGIK 559
+ + G + L++ G V TG + +PVG + LGR+++ +G + +G I +K+ + +
Sbjct: 120 IAMDGTEGLVR-GQPVADTGDPIKIPVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAE 178
Query: 560 APGII 574
AP +
Sbjct: 179 APEFV 183
>Z70266-6|CAD57691.1| 795|Caenorhabditis elegans Hypothetical
protein C40C9.5b protein.
Length = 795
Score = 31.1 bits (67), Expect = 0.65
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -1
Query: 327 PPSPQPGCSSSHNTSDTITNAQDTTVSSRSALGAAPRILSSRMVEISAALWVVETC 160
PPSP P ++ S++ T Q TT S ++A G+ ++ I ++ C
Sbjct: 646 PPSPPPELTTKPKPSESPTTLQTTTESEKAAAGSFTGKALGGVIFIGCGFLIMNVC 701
>Z70266-5|CAA94208.1| 798|Caenorhabditis elegans Hypothetical
protein C40C9.5a protein.
Length = 798
Score = 31.1 bits (67), Expect = 0.65
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -1
Query: 327 PPSPQPGCSSSHNTSDTITNAQDTTVSSRSALGAAPRILSSRMVEISAALWVVETC 160
PPSP P ++ S++ T Q TT S ++A G+ ++ I ++ C
Sbjct: 646 PPSPPPELTTKPKPSESPTTLQTTTESEKAAAGSFTGKALGGVIFIGCGFLIMNVC 701
>AL023827-4|CAD57709.1| 795|Caenorhabditis elegans Hypothetical
protein C40C9.5b protein.
Length = 795
Score = 31.1 bits (67), Expect = 0.65
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -1
Query: 327 PPSPQPGCSSSHNTSDTITNAQDTTVSSRSALGAAPRILSSRMVEISAALWVVETC 160
PPSP P ++ S++ T Q TT S ++A G+ ++ I ++ C
Sbjct: 646 PPSPPPELTTKPKPSESPTTLQTTTESEKAAAGSFTGKALGGVIFIGCGFLIMNVC 701
>AL023827-3|CAA19446.1| 798|Caenorhabditis elegans Hypothetical
protein C40C9.5a protein.
Length = 798
Score = 31.1 bits (67), Expect = 0.65
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -1
Query: 327 PPSPQPGCSSSHNTSDTITNAQDTTVSSRSALGAAPRILSSRMVEISAALWVVETC 160
PPSP P ++ S++ T Q TT S ++A G+ ++ I ++ C
Sbjct: 646 PPSPPPELTTKPKPSESPTTLQTTTESEKAAAGSFTGKALGGVIFIGCGFLIMNVC 701
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 347 GNGLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDAL 499
G + LE D + V+ + GD V RTG + V +G I+G + D +
Sbjct: 41 GEIIRLEGDYATIQVYEETSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGI 91
>U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protein
15, isoform a protein.
Length = 780
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -1
Query: 327 PPSPQPGCSSSHNTSDTITNAQ-DTTVSSRSALGAAPRILSSRMVEISAAL 178
PP PQP + + N T+ Q TT S+ + G P +S ++AA+
Sbjct: 112 PPDPQPTSAQARNPPVTVATTQASTTPSAPNPPGGLPAPSASATAAVAAAV 162
>U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protein
15, isoform b protein.
Length = 777
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -1
Query: 327 PPSPQPGCSSSHNTSDTITNAQ-DTTVSSRSALGAAPRILSSRMVEISAAL 178
PP PQP + + N T+ Q TT S+ + G P +S ++AA+
Sbjct: 109 PPDPQPTSAQARNPPVTVATTQASTTPSAPNPPGGLPAPSASATAAVAAAV 159
>U28730-7|AAA68258.2| 665|Caenorhabditis elegans Abnormal cell
lineage protein 23 protein.
Length = 665
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 615 LDTSLHRXTXRHTGMIPGALIPTLIRDFVSIVPCH 511
+D +HR + G + + P L RDF+S +P H
Sbjct: 56 MDKIVHRLSHYQLGKVDNFIRPMLQRDFISNLPAH 90
>AF275253-1|AAG28037.1| 665|Caenorhabditis elegans LIN-23 protein.
Length = 665
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 615 LDTSLHRXTXRHTGMIPGALIPTLIRDFVSIVPCH 511
+D +HR + G + + P L RDF+S +P H
Sbjct: 56 MDKIVHRLSHYQLGKVDNFIRPMLQRDFISNLPAH 90
>U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical
protein C52E12.4 protein.
Length = 1487
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 326 GVLLRPQGNGLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDV 457
G++ RP GL +P + V+ N L + +I +R G +VDV
Sbjct: 468 GMMRRPSRTGL--QPLPLENVLRNNSTLARVAEIARRAGVVVDV 509
>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform a protein.
Length = 2886
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = -1
Query: 324 PSPQPGCSSSHNTSDTITNAQDTTVSSRSALGAAPRILSS 205
P+ P C SSH TS++ T++ +VS + + +A ILS+
Sbjct: 698 PTSPPSCHSSHVTSNS-THSTHISVSFPNTVTSASSILSN 736
>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
Length = 2914
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = -1
Query: 324 PSPQPGCSSSHNTSDTITNAQDTTVSSRSALGAAPRILSS 205
P+ P C SSH TS++ T++ +VS + + +A ILS+
Sbjct: 698 PTSPPSCHSSHVTSNS-THSTHISVSFPNTVTSASSILSN 736
>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 171 PPTKLPRSPPSSKRGSLEPRPR 236
PP LP PPS ++ LEP+ R
Sbjct: 819 PPPPLPPPPPSVEKKKLEPQDR 840
>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
protein R11G1.1 protein.
Length = 1656
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 459 PSESRSLGV**TLWETYDGKGQ 524
P+ S S+GV T+WETY GQ
Sbjct: 1038 PASSHSVGVQPTIWETYRVLGQ 1059
>U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astacin
protease protein33 protein.
Length = 644
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +3
Query: 123 WRYPQWPWHLENYMSQPPTKLPRSPPSSKRGSLEPRPRLI 242
W P PW + +PP LP PP + + +P+++
Sbjct: 59 WDRPPPPWRRPPWHRRPPWGLPPPPPPPEPEPQQDQPQVM 98
>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 171 PPTKLPRSPPSSKRGSLEPRPR 236
PP LP PPS ++ LEP+ R
Sbjct: 819 PPPPLPPPPPSVEKKKLEPQDR 840
>AF016418-2|AAK18901.1| 893|Caenorhabditis elegans Hypothetical
protein C49G7.7 protein.
Length = 893
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -3
Query: 463 DGNVYDSTSTLDNISFFDKLVITKYY--HTHIVRFQVKAIPLRPEENSTISSAWMFFKP* 290
DG D+ L IS ++ +K+Y H++R K I + + ST SS+W F K
Sbjct: 249 DGERVDADDELSGISSYEAAP-SKFYMLEDHVIRTN-KKINYK-NDVSTDSSSWKFAKVQ 305
Query: 289 HERYHHQ 269
R+H +
Sbjct: 306 ISRFHFE 312
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,145,919
Number of Sequences: 27780
Number of extensions: 294860
Number of successful extensions: 1083
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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