Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00001
(615 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 23 1.8
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 22 4.1
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 22 5.5
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 5.5
AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 22 5.5
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 21 7.2
AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase pro... 21 7.2
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 21 9.6
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 21 9.6
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 9.6
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 21 9.6
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 21 9.6
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 23.4 bits (48), Expect = 1.8
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Frame = -1
Query: 324 PSPQPGCSSSHN--TSDTITNAQDTTVSSRSALGAAPRILSSRMVEISAALWVVETCSFR 151
P+ PGCSS + TS T SS L A S ++ + +FR
Sbjct: 889 PASTPGCSSKNGEPTSAAFAQGFATAASSPGLLERASPAFSGTSSPTNSLVGKTVAVNFR 948
Query: 150 D 148
D
Sbjct: 949 D 949
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 22.2 bits (45), Expect = 4.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 487 YTPKDLLSDGNVYDSTSTLDNISFF 413
YTP+ L GNV + +S N F+
Sbjct: 356 YTPEGLNMLGNVIEGSSDSINTKFY 380
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 21.8 bits (44), Expect = 5.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 487 YTPKDLLSDGNVYDSTSTLDNISFF 413
YTP+ L GNV + S N F+
Sbjct: 356 YTPEGLNMLGNVIEGNSDSINTKFY 380
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.8 bits (44), Expect = 5.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 490 YYTPKDLLSDGNVYDSTSTLDNISFFDK 407
+Y P+DL ++Y++ L+ SF K
Sbjct: 346 FYHPEDLPFIKDIYETVIKLEGASFRSK 373
Score = 21.4 bits (43), Expect = 7.2
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -3
Query: 568 TWRLNTDPHTGFRVD 524
T +L+TDP+T F+V+
Sbjct: 680 TEKLSTDPNTHFQVN 694
>AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein.
Length = 238
Score = 21.8 bits (44), Expect = 5.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 490 YYTPKDLLSDGNVYDSTSTLDNISFFDK 407
+Y P+DL ++Y++ L+ SF K
Sbjct: 52 FYHPEDLPFIKDIYETVIKLEGASFRSK 79
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 21.4 bits (43), Expect = 7.2
Identities = 5/7 (71%), Positives = 5/7 (71%)
Frame = +3
Query: 129 YPQWPWH 149
YP W WH
Sbjct: 231 YPNWEWH 237
>AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase
protein.
Length = 580
Score = 21.4 bits (43), Expect = 7.2
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +1
Query: 10 WLSVCHNYKFVKNVADLRSY 69
WL V NYK + A R Y
Sbjct: 443 WLPVNENYKSLNLAAQKREY 462
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/25 (28%), Positives = 14/25 (56%)
Frame = -1
Query: 231 GAAPRILSSRMVEISAALWVVETCS 157
G+ ++ R+ + +A WV+ CS
Sbjct: 61 GSKKALMKERIRQKAAGHWVIHPCS 85
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/25 (28%), Positives = 14/25 (56%)
Frame = -1
Query: 231 GAAPRILSSRMVEISAALWVVETCS 157
G+ ++ R+ + +A WV+ CS
Sbjct: 61 GSKKALMKERIRQKAAGHWVIHPCS 85
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/25 (28%), Positives = 14/25 (56%)
Frame = -1
Query: 231 GAAPRILSSRMVEISAALWVVETCS 157
G+ ++ R+ + +A WV+ CS
Sbjct: 61 GSKKALMKERIRQKAAGHWVIHPCS 85
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 21.0 bits (42), Expect = 9.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -1
Query: 105 AALGKRLATEPAIRAEISDIFHKLI 31
++ GK LATEP + + ++ F + I
Sbjct: 347 SSFGKILATEPTLFSNVTPKFPRNI 371
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 21.0 bits (42), Expect = 9.6
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -3
Query: 130 YRHL*HLGSSIRQAPGYRASNTSGDQRHFSQT 35
Y+H GS + GYR+++ S H T
Sbjct: 94 YQHQQDHGSGMDGMGGYRSASPSPGMGHMGHT 125
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,183
Number of Sequences: 438
Number of extensions: 3831
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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