Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_L04
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 29 0.77
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 2.3
SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyc... 27 3.1
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 26 4.1
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo... 26 5.4
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 26 5.4
SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.4
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 26 5.4
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 25 7.2
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 25 7.2
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c... 25 9.5
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 28.7 bits (61), Expect = 0.77
Identities = 11/60 (18%), Positives = 27/60 (45%)
Frame = +1
Query: 448 HAISVARHVLDHTKHSFLVGELATQFAVEMGFQEESLTTSVSKKLWMKWHNEHHCQPNFW 627
H + +L +KH + + ++ + + + +SK +W+ W +C+ NF+
Sbjct: 608 HLLRPTIKILQISKHEYFL-HFSSSYIFNDARERDVYGVKLSKNMWISWAYVDNCEANFF 666
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +1
Query: 223 SFTNSTVKAWEVLNNGGTALDAVEQGASVCEDQQCDGTVGYGGSPDENGETTLDA 387
S NS + V +N G + V + + ED+Q G D NG +T A
Sbjct: 387 SLVNSQNQTTSVSDNTGPN-ENVNEAEHISEDEQASTATDVNGISDNNGSSTQQA 440
>SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 197
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 190 ETNIPIVITTWSFTNSTVKAWEVLNNGGTALDAVEQGASV 309
+TN+ I + S N +++A VL N G +D+ G++V
Sbjct: 4 KTNLQISVICASNQNRSMEAHNVLKNAGYQVDSFGTGSAV 43
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 429 WLEKDQTCHICC*TCIG 479
WLE+ QTC IC + IG
Sbjct: 340 WLERQQTCPICRRSVIG 356
>SPAC637.11 |suv3||ATP-dependent RNA helicase
Suv3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 129 NEPNRNIFNLCISLFNECLFRNKYSHSD 212
N P +N+FN CI ++ FR SD
Sbjct: 468 NLPTKNLFNACIGAKDDLFFRYLSLFSD 495
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 25.8 bits (54), Expect = 5.4
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +1
Query: 124 YK-MNQIGIFLTYVLVYLTN-VCSETNIPIVI-TTWSFTNSTVKAWEVLNNGGTALDAVE 294
YK M ++ ++LT++ V T V +E IV+ T WS+ N W + + G + +E
Sbjct: 455 YKSMREVLVYLTHLDVVDTEIVMTEKLARIVVGTEWSWQNLNTLCWAIGSISGAMNEEME 514
Query: 295 Q 297
+
Sbjct: 515 K 515
>SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 129
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 512 SSPTKKECFVWSNTCLATDMACLI 441
+S T K CF W+N+ L D+ I
Sbjct: 90 NSSTIKPCFTWANSVLYNDILIFI 113
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.8 bits (54), Expect = 5.4
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -1
Query: 431 PPTAPIFIVLPFIIRASNVVSPFSSGLPPYPTVPSHCWSSQTDAPCSTASNAVPPLFRTS 252
P +AP + +S + P PT+PS+ + TD+P S S+ +P + T+
Sbjct: 139 PASAPKHDLYSSANASSASLHPTEQRTTSSPTIPSYANRTHTDSPTS-LSHRLPNVPDTN 197
Query: 251 QALTVEFVN 225
TV+ N
Sbjct: 198 ALNTVQANN 206
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +2
Query: 545 KKNPSLPLYQKNYG*NGIMNII 610
+KN +P+YQ+ +G +GI ++
Sbjct: 101 EKNKLVPIYQETFGKSGIRRVV 122
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 25.4 bits (53), Expect = 7.2
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Frame = +1
Query: 241 VKAW--EVLNNGGTALDAVEQGASVCEDQQCDGTVGYGGSPDENGETTLDALIMNGRTMN 414
V AW + G ++ E+GA + + D GY GE AL+ +GR +
Sbjct: 300 VYAWGLNITRQCGIEVEDEEEGAVITKPTLVDALEGYNVKSITGGEHHTLALLEDGRVLA 359
Query: 415 IGAVGGLRRIKHAISVARHVLDHT 486
G R +H + + + L T
Sbjct: 360 WG-----RDDRHQLGIPDNALPET 378
>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 9.5
Identities = 25/78 (32%), Positives = 32/78 (41%)
Frame = -1
Query: 485 VWSNTCLATDMACLILLKPPTAPIFIVLPFIIRASNVVSPFSSGLPPYPTVPSHCWSSQT 306
V +TC A A L+ PP +PI P AS V P S +P P S T
Sbjct: 15 VEKDTCAAAIKAYQYLISPPPSPI----PNDKVASTVDVPKCSTIPESPK-DSIVEPKPT 69
Query: 305 DAPCSTASNAVPPLFRTS 252
P + + V L+R S
Sbjct: 70 ATPVAQLHSKVYDLYRDS 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,788
Number of Sequences: 5004
Number of extensions: 56701
Number of successful extensions: 161
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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