Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_K23
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0897 - 6903294-6903401,6903781-6903855,6904239-6904379,690... 34 0.11
06_03_1496 - 30567968-30568210,30568345-30568513,30568635-305687... 29 4.3
11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458 28 5.6
09_03_0110 + 12432562-12432801,12432811-12433419 28 5.6
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833... 28 7.5
03_02_0712 - 10600147-10600196,10600257-10600378,10600993-106014... 28 7.5
06_03_0381 - 20106714-20107088,20107177-20107594,20107721-201079... 27 9.9
01_01_0340 + 2727135-2727205,2727470-2727639,2728418-2728506,272... 27 9.9
>06_01_0897 -
6903294-6903401,6903781-6903855,6904239-6904379,
6904496-6904646,6905035-6905178,6905276-6905366,
6906071-6906308
Length = 315
Score = 33.9 bits (74), Expect = 0.11
Identities = 47/185 (25%), Positives = 71/185 (38%), Gaps = 11/185 (5%)
Frame = +3
Query: 132 TANGDVPEIELIIKASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPD 311
TA +E+ KAS R G C F Q + + E K + + VD+ P
Sbjct: 55 TARASAEPLEVCAKASLTVPDRLGDCPFTQRVLLTI----EEKHLPYDIKLVDLANKPDW 110
Query: 312 FRTNFEATHPPILIDNGLAILENEKIERHIMKSVPGGHNLFVQDK-EVASLIEN--LYSK 482
F PI+ + +++ I + I + P +K V I N LYS
Sbjct: 111 FLKISPEGKVPIVKLEEQWVADSDVITQAIEEKYPEPSLATPPEKASVILTIGNNFLYSG 170
Query: 483 LKLV------LVRKDEQKSA--ALRAHLGRIDGLLERRETRFLTGDTMCCFDCELMPRLQ 638
K+ L KD AL + L D L+ F+ G+T+ D L P+L
Sbjct: 171 SKIFSTFIGFLKSKDPNDGTEQALLSELTSFDSYLKDNGP-FINGETISAADLSLAPKLY 229
Query: 639 HIRVA 653
H+ +A
Sbjct: 230 HMEIA 234
>06_03_1496 -
30567968-30568210,30568345-30568513,30568635-30568736,
30569087-30571855,30572402-30572430,30572546-30572659,
30572735-30572846,30574730-30574845,30574928-30575068,
30575121-30575243,30575346-30575478,30575842-30575972,
30576065-30576300,30577073-30577376
Length = 1573
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +3
Query: 399 IMKSVPGGHNLFVQDKEVASLIENLYSKLKLVLVRKDEQKSAALRAHLGR-IDGL 560
++K+ GG +V+DK ++ NLYS +L+ V+ ++ ++ A+L +DGL
Sbjct: 368 LLKTTNGGKT-WVRDKAADNIAANLYSVNQLIRVQLTLLQTISVSANLAELVDGL 421
>11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458
Length = 619
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -1
Query: 428 VVSPWHGLHDVTFDL--FVLKYRQPIIDQYGRVCRFEVGAEIWGRLLHVH 285
+ S + HDV L + +I + G+ C +E+ AE+WG L+ VH
Sbjct: 506 LTSKFQKAHDVANFLSEYCALLANALIKKEGQACLWEILAEVWGHLI-VH 554
>09_03_0110 + 12432562-12432801,12432811-12433419
Length = 282
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Frame = -2
Query: 196 RLPSIVDAFIIS--SIS-GTSPLAVPFSAISSDIVI 98
R+PS+ ++++ IS G +PLA+P SA SS +VI
Sbjct: 124 RIPSVPTFYVVALTGISVGGAPLAIPPSAFSSGMVI 159
>06_03_1318 - 29282562-29282566,29282727-29282810,29282913-29283380,
29283735-29283917,29284362-29284467,29284627-29284651,
29284736-29284855,29284920-29284997,29285646-29285774,
29285976-29285989,29286168-29287944,29288344-29288489,
29288921-29291029
Length = 1747
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = -1
Query: 413 HGL-HDVTFDLFVLKYRQPIIDQYGRVCRFEVGAEIWGRL--LHVHCCH 276
HG+ H + F + + +ID YG+ C F+ I+ + + + CC+
Sbjct: 1020 HGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCN 1068
>03_02_0712 -
10600147-10600196,10600257-10600378,10600993-10601489,
10601663-10601851,10601936-10602099,10602193-10602446,
10602535-10602691,10602830-10602995,10603121-10603227,
10603305-10603478,10603594-10603689,10603781-10603862,
10603948-10604058,10604253-10604309,10604638-10604709,
10604799-10605041,10605195-10605341,10605381-10605616,
10605745-10605865
Length = 1014
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 75 LLNSSVS*ITMSDEIAENGTANGDVPEIELIIKASTID 188
+ N V + ++DEI N +VP+ L+ AST+D
Sbjct: 525 IYNEQVRDLLVNDEIRNNSQNGLNVPDASLVCVASTMD 562
>06_03_0381 -
20106714-20107088,20107177-20107594,20107721-20107970,
20108109-20108169,20108346-20108422,20108557-20109007
Length = 543
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 398 HHEVRARGTQPIRAGQGGRVSNREPVFKTEAGAGS 502
HH +R RG AG G ++ +PV +EA GS
Sbjct: 385 HHHLRWRGGA---AGSGNTTASSDPVVASEAALGS 416
>01_01_0340 +
2727135-2727205,2727470-2727639,2728418-2728506,
2729017-2729070,2729310-2729380,2729504-2729585,
2729678-2729774,2729902-2729972
Length = 234
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 9 SCVFGTVLLVCYCVIEV 59
S +F T LL+C+C+IEV
Sbjct: 113 SYIFVTSLLICWCIIEV 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,227,089
Number of Sequences: 37544
Number of extensions: 389525
Number of successful extensions: 1007
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -