Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_K14
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0604 + 4449416-4449766,4450150-4450374                           29   3.2  
12_02_0915 - 24252495-24253079,24253560-24254759,24255234-242553...    28   5.6  
08_02_1034 + 23823194-23823307,23823399-23823620,23823984-238243...    28   5.6  
06_01_0724 + 5299278-5299542,5299690-5299950,5300246-5300351,530...    27   9.9  
02_02_0370 + 9509212-9509293,9509905-9511721                           27   9.9  

>03_01_0604 + 4449416-4449766,4450150-4450374
          Length = 191

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 373 VLLGKCNRFSAGLYPSSRLHR-PYHLSSRFRSQ 468
           VL G+  R++  L P   LH  P+HLSSR R Q
Sbjct: 133 VLAGQFKRYADTLSPVYSLHAAPHHLSSRQRQQ 165


>12_02_0915 -
           24252495-24253079,24253560-24254759,24255234-24255303,
           24257127-24257188
          Length = 638

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 536 LAVADLLVMIDYIPLATPPVHENRFRIKSKFLR 634
           L ++  + + + +PLAT PVH+  +R    +L+
Sbjct: 412 LPLSKFIALTEMVPLATRPVHDGLYRAIDMYLK 444


>08_02_1034 +
           23823194-23823307,23823399-23823620,23823984-23824309,
           23824648-23824777,23825145-23825441,23825550-23825815,
           23827835-23828333,23828902-23828993,23829571-23829735,
           23829817-23830204,23830275-23830393,23830494-23830524,
           23830675-23830880,23830970-23831014,23831120-23831201,
           23832210-23832398,23834499-23834602,23834669-23834759,
           23835097-23835225,23835425-23835556,23835779-23835949,
           23836143-23836171,23836214-23836301,23836313-23836391,
           23836666-23836844
          Length = 1390

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +2

Query: 554 LVMIDYIPLATPPVHENRFRIKSKFLRVGRVH 649
           L ++  +PL TP  +ENR  +++K L++G V+
Sbjct: 391 LSVLGRVPLLTPITNENRRYMETKRLKMGHVY 422


>06_01_0724 +
           5299278-5299542,5299690-5299950,5300246-5300351,
           5300633-5300697,5300759-5301233,5302239-5302347,
           5302432-5302710,5303025-5303231,5303319-5303468,
           5304164-5304277
          Length = 676

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -1

Query: 150 QLMSLRIIIHHYF--NRNIVSRLEFLRA 73
           QL  LR+++HH F  NRN +    FL+A
Sbjct: 602 QLKCLRMLLHHRFSDNRNTLGLASFLKA 629


>02_02_0370 + 9509212-9509293,9509905-9511721
          Length = 632

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/66 (25%), Positives = 34/66 (51%)
 Frame = -1

Query: 639 PTRKNFDLILNRFSCTGGVAKGI*SIITRRSATASPVRIELVHEVISFRLSTAILTELAA 460
           P   ++++ILN  + TGG  + +  +   +++T  P  +   +  +   LS A + E AA
Sbjct: 544 PDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVS--YNTVLSALSHAGMFEEAA 601

Query: 459 EPRRQM 442
           E  ++M
Sbjct: 602 ELMKEM 607


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,393,402
Number of Sequences: 37544
Number of extensions: 301264
Number of successful extensions: 725
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)