Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_K08
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0771 + 5917550-5917829,5918390-5918526,5918617-5918742,591... 142 3e-34
03_02_0955 - 12690405-12690842,12690940-12691130,12691208-126917... 30 1.9
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732... 29 4.3
10_08_0003 - 13992276-13992311,13992461-13992598,13992682-139928... 28 5.6
09_04_0286 + 16400695-16401369,16401473-16401658,16402115-164025... 28 5.6
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 28 5.6
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688... 27 9.9
>07_01_0771 +
5917550-5917829,5918390-5918526,5918617-5918742,
5919168-5919221,5919344-5919457,5919895-5919950,
5920017-5920058,5920580-5920655,5920765-5920836,
5920908-5921033,5921117-5921221,5921333-5921416,
5921636-5921683
Length = 439
Score = 142 bits (343), Expect = 3e-34
Identities = 74/161 (45%), Positives = 102/161 (63%), Gaps = 3/161 (1%)
Frame = +3
Query: 147 LVLIDNLNIKETHSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAPSVLEF 326
LVL+D+L ++ +HS FF SLQ RG+ L F+LADD L L +YG+YLY L++FAPS F
Sbjct: 36 LVLVDDLAVRSSHSAFFASLQGRGFDLDFRLADDPKLSLHRYGQYLYDGLVLFAPSTPRF 95
Query: 327 GGQVDSEAITKFIDDXXXXXXXXXXXXXDVYREIASECGFEMDEE-SAAVIDHFNYDVTD 503
GG VD +I +FID D+ R IA+ECG + DE+ A VIDH NY TD
Sbjct: 96 GGSVDQNSILEFIDAGHDMILAADSSASDLIRGIATECGVDFDEDPEAMVIDHINYAATD 155
Query: 504 -EGDHTRIVVSPKNLIKAPTIVGEQNTQ-PLLFEGTGLIVD 620
EGDHT +++ +LI++ I+G + + P+LF G G V+
Sbjct: 156 AEGDHT--LIAGDDLIQSDVILGSKKIEAPVLFRGIGHAVN 194
>03_02_0955 -
12690405-12690842,12690940-12691130,12691208-12691718,
12692240-12693171,12693260-12693351,12693430-12693509,
12693568-12693621,12693734-12693850,12693949-12694194,
12694273-12694432,12694512-12694576,12694686-12694877,
12694980-12695061,12695153-12695925
Length = 1310
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = -2
Query: 442 PHSEAISLYTS--PAAALPAIRRFPPSSMNLVMASLS-TCPPN 323
P +E++ S P+AA P ++ PP ++ V++SLS PPN
Sbjct: 23 PTAESVLRVASRDPSAAAPLLQALPPDGLDDVLSSLSPASPPN 65
>08_02_0749 - 20769224-20770535,20770649-20771510,20771622-20773263,
20773357-20773701,20773858-20773952,20774218-20774344,
20774430-20774435
Length = 1462
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 62 WLENQNENHDNFRDIDHFFNARLRGS*NFSSNR*LKYQRNAFTI 193
W+EN N + +R ++N L G N + K Q N F +
Sbjct: 1065 WVENSNNSRTTWRKSPDYYNYGLPGPRNAAEAAVAKMQSNGFVV 1108
>10_08_0003 -
13992276-13992311,13992461-13992598,13992682-13992852,
13992926-13992989,13993404-13993552,13993700-13993753,
13993894-13994034,13994134-13994412,13994518-13994743,
13995328-13995734
Length = 554
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Frame = +3
Query: 435 ECGFEMDEESAAVIDHFNYDVTDE----GDHT-RIVVSPKNLIK----APTIVGEQNTQP 587
E G +MD+ A V+D F+ D GD T R+ ++P L++ A TI G + T+P
Sbjct: 357 EVGVKMDKHGAIVVDEFSRTSVDSIWAVGDVTNRVNLTPVALMEGGALARTIFGNEPTKP 416
>09_04_0286 +
16400695-16401369,16401473-16401658,16402115-16402575,
16402678-16402836,16402914-16403265,16403360-16403653
Length = 708
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -2
Query: 430 AISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSS 317
AISLYTSP F PSS ST PP++S
Sbjct: 5 AISLYTSPPPGAVYSSEFDPSSRG-SSPPCSTAPPSTS 41
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 28.3 bits (60), Expect = 5.6
Identities = 24/94 (25%), Positives = 41/94 (43%)
Frame = -2
Query: 487 LKWSMTAADSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSSTEG 308
L+ S T++ SS+ S+P + + +L SS + + AS ++ P ++
Sbjct: 4 LRRSSTSSSSSASSSPRAPSSPPPWVQLRSLLVASSSSSSSSSSLAASGNSASPAAAAAA 63
Query: 307 ANTMRFLYKYSPYFDRTRFASSASLNVKP*PRSC 206
A+ YSP+ DR S S + P SC
Sbjct: 64 ASASFSPASYSPHSDRGGTKSPWSRRKRKRPLSC 97
>01_03_0103 -
12567986-12568141,12568307-12568442,12568751-12568824,
12568932-12569175,12569480-12569766,12570618-12571103,
12571348-12571459,12571540-12571745,12573071-12573276,
12573831-12574162,12574284-12574825,12574967-12576308,
12576386-12576457,12578438-12578505,12579011-12580174
Length = 1808
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = -1
Query: 491 IVEVVYDCCRFLVHLKSTF*SDFSIYVSGRGVTSHKKVSAIVYEFGYGLTVYLSTKLEHG 312
IVE YDCC +++H KS + + ++ S + S + ++Y+ L + + HG
Sbjct: 551 IVET-YDCC-YMLHPKSPYTLENIMHYSPEALWSDWHIRFLIYQIISALVYLHDSGVHHG 608
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,296,899
Number of Sequences: 37544
Number of extensions: 321207
Number of successful extensions: 955
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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