Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_K03
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 136 1e-32
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 55 4e-08
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 50 1e-06
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 48 6e-06
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 47 1e-05
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 46 2e-05
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 46 2e-05
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 46 2e-05
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 45 4e-05
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 45 4e-05
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 44 9e-05
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 44 9e-05
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 44 9e-05
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 43 2e-04
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 43 2e-04
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 43 2e-04
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 43 2e-04
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 43 2e-04
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 43 2e-04
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 43 2e-04
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 43 2e-04
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 41 7e-04
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 40 0.001
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 40 0.002
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 40 0.002
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 40 0.002
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 39 0.003
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 39 0.004
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 39 0.004
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 39 0.004
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 38 0.005
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 38 0.005
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 38 0.005
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 38 0.005
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 38 0.005
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 38 0.005
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 38 0.005
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 38 0.006
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 37 0.011
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 36 0.025
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 36 0.025
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 36 0.025
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 36 0.025
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 36 0.025
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 36 0.025
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 35 0.044
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 35 0.044
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 35 0.044
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 35 0.044
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 35 0.044
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 35 0.058
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 34 0.077
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 34 0.077
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 34 0.077
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 34 0.077
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical pr... 33 0.23
Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical pr... 33 0.23
AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA ... 33 0.23
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.41
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 32 0.41
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 32 0.41
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 32 0.41
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.41
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 31 0.54
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 31 0.54
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 31 0.94
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 31 0.94
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 31 0.94
AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical ... 30 1.6
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z46242-12|CAA86332.1| 690|Caenorhabditis elegans Hypothetical p... 27 8.8
Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical p... 27 8.8
AL132862-21|CAB70232.1| 476|Caenorhabditis elegans Hypothetical... 27 8.8
AF256467-1|AAF71546.1| 690|Caenorhabditis elegans SEL-5B serine... 27 8.8
AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A serine... 27 8.8
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 136 bits (329), Expect = 1e-32
Identities = 68/143 (47%), Positives = 87/143 (60%), Gaps = 2/143 (1%)
Frame = +2
Query: 230 RDPIPYLPPAAKLPHEK--KQKGYDGVGAFLSCFEHPSXXXXXXXXXXXXXXXXXXXXXK 403
R P+ YLPP L +K K+ GV ++ FE P K
Sbjct: 16 RPPVQYLPPCQDLLVDKNAKRAPMTGVAQYIQLFEDPKDTPAKIPVVTKAEAKEEKRRQK 75
Query: 404 AEQIAYKLEQEIALWDPSSNPKVTADPFKTLFVARVNYDTSESKLRREFEGYGAIKKIHM 583
E +AYK+EQ IA W+P+ NP+ + DP++TLFV R+NY+TSESKLRREFE YG IKK+ M
Sbjct: 76 DELLAYKVEQGIATWNPAENPRASEDPYRTLFVGRINYETSESKLRREFEAYGKIKKLTM 135
Query: 584 VYDKENGKPRGYAFIEYEHERDM 652
V+D E GKPRGYAFIEY + +M
Sbjct: 136 VHD-EAGKPRGYAFIEYSDKAEM 157
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 55.2 bits (127), Expect = 4e-08
Identities = 22/49 (44%), Positives = 33/49 (67%)
Frame = +2
Query: 488 KTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEY 634
+++FV ++YD SE +R F G + I MV+D+E GKP+GY FIE+
Sbjct: 18 RSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEF 66
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 50.4 bits (115), Expect = 1e-06
Identities = 18/51 (35%), Positives = 32/51 (62%)
Frame = +2
Query: 491 TLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHE 643
+++V V Y +E ++ F G + + +VYD+E G+PRG+AF+E+ E
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEE 57
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 48.0 bits (109), Expect = 6e-06
Identities = 19/51 (37%), Positives = 31/51 (60%)
Frame = +2
Query: 491 TLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHE 643
+++V + T+E +L F G I + +V D+E G+PRG+AFIE+ E
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEE 56
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/52 (34%), Positives = 32/52 (61%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHERD 649
+FV ++ + +E + +F YG IK IH+ D+ G +GYA +EYE +++
Sbjct: 57 VFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKE 108
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/48 (37%), Positives = 31/48 (64%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYE 637
++V ++++ E LRR F+ +G IK I+M +D G + +AF+EYE
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYE 151
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/48 (37%), Positives = 31/48 (64%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYE 637
++V ++++ E LRR F+ +G IK I+M +D G + +AF+EYE
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYE 151
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/48 (37%), Positives = 31/48 (64%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYE 637
++V ++++ E LRR F+ +G IK I+M +D G + +AF+EYE
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYE 151
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 45.2 bits (102), Expect = 4e-05
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +2
Query: 491 TLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHE 643
+++V + T+E L F G + + +V D+E G+PRG+AF+E+ E
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEE 55
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 45.2 bits (102), Expect = 4e-05
Identities = 17/62 (27%), Positives = 38/62 (61%)
Frame = +2
Query: 467 KVTADPFKTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHER 646
K AD K+++V V+Y + ++ + F G G++ ++ + D+ +G P+G+A++E+ +
Sbjct: 72 KAEADA-KSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKE 130
Query: 647 DM 652
M
Sbjct: 131 GM 132
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 44.0 bits (99), Expect = 9e-05
Identities = 17/50 (34%), Positives = 33/50 (66%)
Frame = +2
Query: 488 KTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYE 637
+T+++ V + T +S+L F+ YG+I+ ++M YD + G RG+A I ++
Sbjct: 25 QTVYLTHVKWVTGKSQLEHYFKRYGSIQSVNMFYDPDTGLHRGFASITFD 74
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +2
Query: 491 TLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHERD 649
+L + ++Y T+ + LRR FE YG I +H+ DK + + +G+ F+ + RD
Sbjct: 20 SLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRD 72
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +2
Query: 491 TLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHERD 649
+L + ++Y T+ + LRR FE YG I +H+ DK + + +G+ F+ + RD
Sbjct: 20 SLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRD 72
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/51 (31%), Positives = 32/51 (62%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHER 646
+++ ++Y SE + F YG + I+++ DK+ GK +G+AF+ Y+ +R
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQR 90
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 488 KTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYE 637
K L+V+ V D +E L F YG + K ++ DK KPRG+ F+ ++
Sbjct: 114 KRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFD 163
Score = 31.5 bits (68), Expect = 0.54
Identities = 14/73 (19%), Positives = 36/73 (49%)
Frame = +2
Query: 434 EIALWDPSSNPKVTADPFKTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPR 613
EI + S + + + + +FV + +T++ +R + +G I I ++ D + R
Sbjct: 5 EIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSR 64
Query: 614 GYAFIEYEHERDM 652
G+ F+ + + ++
Sbjct: 65 GFGFVTFSGKTEV 77
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 488 KTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYE 637
K L+V+ V D +E L F YG + K ++ DK KPRG+ F+ ++
Sbjct: 76 KRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFD 125
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 488 KTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYE 637
K L+V+ V D +E L F YG + K ++ DK KPRG+ F+ ++
Sbjct: 76 KRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFD 125
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 488 KTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYE 637
K L+V+ V D +E L F YG + K ++ DK KPRG+ F+ ++
Sbjct: 114 KRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFD 163
Score = 31.5 bits (68), Expect = 0.54
Identities = 14/73 (19%), Positives = 36/73 (49%)
Frame = +2
Query: 434 EIALWDPSSNPKVTADPFKTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPR 613
EI + S + + + + +FV + +T++ +R + +G I I ++ D + R
Sbjct: 5 EIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSR 64
Query: 614 GYAFIEYEHERDM 652
G+ F+ + + ++
Sbjct: 65 GFGFVTFSGKTEV 77
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 488 KTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYE 637
K L+V+ V D +E L F YG + K ++ DK KPRG+ F+ ++
Sbjct: 114 KRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFD 163
Score = 31.5 bits (68), Expect = 0.54
Identities = 14/73 (19%), Positives = 36/73 (49%)
Frame = +2
Query: 434 EIALWDPSSNPKVTADPFKTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPR 613
EI + S + + + + +FV + +T++ +R + +G I I ++ D + R
Sbjct: 5 EIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSR 64
Query: 614 GYAFIEYEHERDM 652
G+ F+ + + ++
Sbjct: 65 GFGFVTFSGKTEV 77
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 488 KTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEY 634
K +FV ++ + + L F YG + + + YD+ NG+ RG+AF+E+
Sbjct: 29 KKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEF 77
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +2
Query: 488 KTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHE 643
K +FV + D SE LR FE +G + I +DK+ R +AFI +E E
Sbjct: 110 KKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEE 161
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 488 KTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEY 634
K +FV ++ + + L F YG + + + YD+ NG+ RG+AF+E+
Sbjct: 29 KKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEF 77
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +2
Query: 488 KTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHE 643
K +FV + D SE LR FE +G + I +DK+ R +AFI +E E
Sbjct: 110 KKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEE 161
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +2
Query: 482 PFKTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEY 634
P K L V ++ T+E LR F +G I K +VYD+ +G RG+ FI +
Sbjct: 74 PSKCLGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYF 124
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEY 634
LF+ + Y T E L+ F+ YG + ++ +V DK+ G +G+A +E+
Sbjct: 281 LFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEF 327
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/79 (26%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Frame = +2
Query: 407 EQIAYKLEQ--EIALWDPSSNPKVTADPFKTLFVARVNYDTSESKLRREFEGYGAIKKIH 580
+QI K+ + E A + P + + A K++F+ V+++++ ++ F+G G I K
Sbjct: 26 QQIQNKMAKHLESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTT 85
Query: 581 MVYDKENGKPRGYAFIEYE 637
+ DK K + +A+IE++
Sbjct: 86 IPKDKFTKKQKNFAYIEFD 104
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +2
Query: 488 KTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHERD 649
+TL+V D +E L F +G + I + D E+GK RG+ F+E++ D
Sbjct: 11 RTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAED 64
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 485 FKTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFI 628
F +FV + Y TS+ L FE +G I++ ++ D+ K RGY F+
Sbjct: 34 FTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFV 81
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/79 (26%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Frame = +2
Query: 407 EQIAYKLEQ--EIALWDPSSNPKVTADPFKTLFVARVNYDTSESKLRREFEGYGAIKKIH 580
EQI K+ + E A + P + + A K++F+ V+++++ ++ F+G G I +
Sbjct: 32 EQIQNKMAKNLESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTT 91
Query: 581 MVYDKENGKPRGYAFIEYE 637
+ DK K + +A+IE++
Sbjct: 92 IPKDKFTKKQKNFAYIEFD 110
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +2
Query: 482 PFKTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHER 646
P LFV ++N T++ L F +G I +V D+ +G YAFIE+++ +
Sbjct: 239 PENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAK 293
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +2
Query: 482 PFKTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHER 646
P LFV ++N T++ L F +G I +V D+ +G YAFIE+++ +
Sbjct: 239 PENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAK 293
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +2
Query: 482 PFKTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHER 646
P LFV ++N T++ L F +G I +V D+ +G YAFIE+++ +
Sbjct: 170 PENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAK 224
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/50 (30%), Positives = 31/50 (62%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHE 643
+FV V++ ++ +L+ F +G + + V K+ GKP+G AF++++ E
Sbjct: 685 VFVRNVHFQATDDELKALFSKFGTVTSVRRVTHKD-GKPKGIAFVDFDTE 733
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHE 643
+FV T+E++LR FE + A+K + MV + G+ +GY FI +E E
Sbjct: 68 IFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLD-GQSKGYGFITFETE 116
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHE 643
+FV T+E++LR FE + A+K + MV + G+ +GY FI +E E
Sbjct: 69 IFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLD-GQSKGYGFITFETE 117
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +2
Query: 449 DPSSNPKVTADPFKTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFI 628
D S +P +FV ++ +E+ RR FE YG++ +++ DK +G F+
Sbjct: 42 DVSPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFV 101
Query: 629 EYEHERD 649
+ H +D
Sbjct: 102 TFYHRKD 108
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +2
Query: 449 DPSSNPKVTADPFKTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFI 628
D S +P +FV ++ +E+ RR FE YG++ +++ DK +G F+
Sbjct: 42 DVSPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFV 101
Query: 629 EYEHERD 649
+ H +D
Sbjct: 102 TFYHRKD 108
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +2
Query: 449 DPSSNPKVTADPFKTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFI 628
D S +P +FV ++ +E+ RR FE YG++ +++ DK +G F+
Sbjct: 42 DVSPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFV 101
Query: 629 EYEHERD 649
+ H +D
Sbjct: 102 TFYHRKD 108
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +2
Query: 449 DPSSNPKVTADPFKTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFI 628
D S +P +FV ++ +E+ RR FE YG++ +++ DK +G F+
Sbjct: 42 DVSPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFV 101
Query: 629 EYEHERD 649
+ H +D
Sbjct: 102 TFYHRKD 108
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +2
Query: 449 DPSSNPKVTADPFKTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFI 628
D S +P +FV ++ +E+ RR FE YG++ +++ DK +G F+
Sbjct: 42 DVSPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFV 101
Query: 629 EYEHERD 649
+ H +D
Sbjct: 102 TFYHRKD 108
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +2
Query: 449 DPSSNPKVTADPFKTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFI 628
D S +P +FV ++ +E+ RR FE YG++ +++ DK +G F+
Sbjct: 42 DVSPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFV 101
Query: 629 EYEHERD 649
+ H +D
Sbjct: 102 TFYHRKD 108
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +2
Query: 449 DPSSNPKVTADPFKTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFI 628
D S +P +FV ++ +E+ RR FE YG++ +++ DK +G F+
Sbjct: 42 DVSPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFV 101
Query: 629 EYEHERD 649
+ H +D
Sbjct: 102 TFYHRKD 108
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +2
Query: 452 PSSNPKV-TADPFKTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDK-ENGKPRGYAF 625
P +P +A P K + + ++ + ++ L F YGAIK + + D+ N RGY +
Sbjct: 120 PRRSPAARSASPAKRVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGY 179
Query: 626 IEYEHERD 649
+EY++ D
Sbjct: 180 VEYDNLED 187
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +2
Query: 422 KLEQEIALWDPSSNPKVTADPFKTLFVARVNYDTSESKLRREFEGY-GAIKKIHMVYDKE 598
KL+ + D + K +FV + ++ +E L F G ++ + +V DK+
Sbjct: 224 KLDDHVIRVDKVGSKKKEFGKDMAIFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKD 283
Query: 599 NGKPRGYAFIEYEHE 643
GK +G+AF+ ++ +
Sbjct: 284 TGKGKGFAFVNFKQD 298
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 491 TLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHERD 649
T V + + +E +LR F G + +I + DK G P+G+AF+ +E D
Sbjct: 177 TCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDD 229
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYE 637
L+V ++ + L+++FE YG I ++ D ENG+ +G+ F+ +E
Sbjct: 319 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTD-ENGRSKGFGFVCFE 365
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 35.9 bits (79), Expect = 0.025
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHERD 649
+FV + + +KLR F +G + + ++ D K +GY F+ Y D
Sbjct: 134 VFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRRED 185
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 479 DPFKTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEY 634
DP +TLFVA ++ ++ L F GA+ K ++++ N YAF+E+
Sbjct: 38 DP-RTLFVANLDPAITDEFLATLFNQIGAVMKAKIIFEGLNDP---YAFVEF 85
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYE 637
L+V ++ + L+++FE YG I ++ D ENG+ +G+ F+ +E
Sbjct: 259 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTD-ENGRSKGFGFVCFE 305
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYE 637
L+V ++ + L+++FE YG I ++ D ENG+ +G+ F+ +E
Sbjct: 256 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTD-ENGRSKGFGFVCFE 302
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYE 637
L+V ++ + L+++FE YG I ++ D ENG+ +G+ F+ +E
Sbjct: 319 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTD-ENGRSKGFGFVCFE 365
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 35.1 bits (77), Expect = 0.044
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEY 634
+FV ++ + KLR F+ +G + ++ D K +GY F+ Y
Sbjct: 24 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSY 70
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 35.1 bits (77), Expect = 0.044
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEY 634
+FV ++ + KLR F+ +G + ++ D K +GY F+ Y
Sbjct: 34 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSY 80
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 35.1 bits (77), Expect = 0.044
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEY 634
+FV ++ + KLR F+ +G + ++ D K +GY F+ Y
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSY 183
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +2
Query: 476 ADPFKTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEY 634
+D +TL+V ++ +E + F G++ K +++D N YAF+E+
Sbjct: 42 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP---YAFVEF 91
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 35.1 bits (77), Expect = 0.044
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEY 634
+FV ++ + KLR F+ +G + ++ D K +GY F+ Y
Sbjct: 105 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSY 151
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 35.1 bits (77), Expect = 0.044
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHERD 649
++V + D E L FE G I + ++ D +G RGYAF+ Y ++ D
Sbjct: 202 IYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKED 253
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 34.7 bits (76), Expect = 0.058
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 488 KTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEY 634
K +F+ ++YDT E ++ E +G I + K++G +G AF+ +
Sbjct: 263 KVVFLRNLSYDTKEELIKEELSKFGKIDLAIICKYKDSGHSKGTAFVHF 311
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 34.3 bits (75), Expect = 0.077
Identities = 18/64 (28%), Positives = 36/64 (56%)
Frame = +2
Query: 458 SNPKVTADPFKTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYE 637
++PK D K LF+ ++ SE ++R F +G + ++ ++ + G +G AF++Y+
Sbjct: 115 ASPKDKMDD-KKLFIGMLSKQQSEDEVRALFATFGELDEVTVLRGAD-GASKGCAFVKYK 172
Query: 638 HERD 649
H D
Sbjct: 173 HGLD 176
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 34.3 bits (75), Expect = 0.077
Identities = 11/52 (21%), Positives = 31/52 (59%)
Frame = +2
Query: 488 KTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHE 643
K +F+ ++ ++ +++ FE YG ++ +++DK + RG+ F+ ++ +
Sbjct: 134 KKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSD 185
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 34.3 bits (75), Expect = 0.077
Identities = 18/64 (28%), Positives = 36/64 (56%)
Frame = +2
Query: 458 SNPKVTADPFKTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYE 637
++PK D K LF+ ++ SE ++R F +G + ++ ++ + G +G AF++Y+
Sbjct: 115 ASPKDKMDD-KKLFIGMLSKQQSEDEVRALFATFGELDEVTVLRGAD-GASKGCAFVKYK 172
Query: 638 HERD 649
H D
Sbjct: 173 HGLD 176
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 34.3 bits (75), Expect = 0.077
Identities = 11/52 (21%), Positives = 31/52 (59%)
Frame = +2
Query: 488 KTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHE 643
K +F+ ++ ++ +++ FE YG ++ +++DK + RG+ F+ ++ +
Sbjct: 134 KKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSD 185
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 33.5 bits (73), Expect = 0.13
Identities = 10/26 (38%), Positives = 22/26 (84%)
Frame = +2
Query: 575 IHMVYDKENGKPRGYAFIEYEHERDM 652
IH+V+D+++G +G+A++ +E+E+ M
Sbjct: 41 IHLVHDRDSGSFKGFAYVTFENEQQM 66
>Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 515 YDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHERD 649
YD +++++R FE KI + + +G+P G AF+++E E D
Sbjct: 290 YDCTDAQIRTFFEPLKLTDKILFI-TRTDGRPTGDAFVQFETEED 333
>Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 515 YDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHERD 649
YD +++++R FE KI + + +G+P G AF+++E E D
Sbjct: 290 YDCTDAQIRTFFEPLKLTDKILFI-TRTDGRPTGDAFVQFETEED 333
>AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA
binding protein SYM-2 protein.
Length = 618
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 515 YDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHERD 649
YD +++++R FE KI + + +G+P G AF+++E E D
Sbjct: 290 YDCTDAQIRTFFEPLKLTDKILFI-TRTDGRPTGDAFVQFETEED 333
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.9 bits (69), Expect = 0.41
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +2
Query: 455 SSNPKVTADPFKTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEY 634
S+ P V + T++V ++ SES L G + ++M D+ +G+ F+E+
Sbjct: 2 SAGPIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEF 61
Query: 635 EHERD 649
E D
Sbjct: 62 MGEED 66
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHERD 649
++V + D + +L F+ +G I+K+ + +P G+AF+EY+ RD
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVAR-----RPPGFAFVEYDDVRD 51
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHERD 649
++V + D + +L F+ +G I+K+ + +P G+AF+EY+ RD
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVAR-----RPPGFAFVEYDDVRD 51
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHERD 649
++V + D + +L F+ +G I+K+ + +P G+AF+EY+ RD
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVAR-----RPPGFAFVEYDDVRD 51
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.9 bits (69), Expect = 0.41
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +2
Query: 455 SSNPKVTADPFKTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEY 634
S+ P V + T++V ++ SES L G + ++M D+ +G+ F+E+
Sbjct: 12 SAGPIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEF 71
Query: 635 EHERD 649
E D
Sbjct: 72 MGEED 76
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHERD 649
++V + D E ++ F YG IK + D ++G+ +AF+E+E RD
Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYV----DIKSGRGPAFAFVEFEDHRD 58
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHERD 649
++V + D E ++ F YG IK + D ++G+ +AF+E+E RD
Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYV----DIKSGRGPAFAFVEFEDHRD 58
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 30.7 bits (66), Expect = 0.94
Identities = 11/49 (22%), Positives = 26/49 (53%)
Frame = +2
Query: 488 KTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEY 634
+ LF+ +++DT++ +L F +G + ++ D RG+ F+ +
Sbjct: 49 RKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTF 97
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 30.7 bits (66), Expect = 0.94
Identities = 11/49 (22%), Positives = 26/49 (53%)
Frame = +2
Query: 488 KTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEY 634
+ LF+ +++DT++ +L F +G + ++ D RG+ F+ +
Sbjct: 69 RKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTF 117
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 30.7 bits (66), Expect = 0.94
Identities = 11/49 (22%), Positives = 26/49 (53%)
Frame = +2
Query: 488 KTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEY 634
+ LF+ +++DT++ +L F +G + ++ D RG+ F+ +
Sbjct: 70 RKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTF 118
>AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical
protein F25G6.9 protein.
Length = 1373
Score = 29.9 bits (64), Expect = 1.6
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Frame = +3
Query: 339 KLLHQQEWRREKNALRGEE-----ERKQSRLLIN*SRRLHCGILLVIRKLQQIHSKLFLL 503
K L + EW + R E+ S ++ + S L LLV+ + + SKLF
Sbjct: 1046 KFLERSEWTKADTDARLAMITLACEQNISEVIFHFSSSLTVKELLVLSENLRSVSKLFPR 1105
Query: 504 HE*TMILLNLNSEENLKDMELSKR 575
E TMIL+ + + +D+E SK+
Sbjct: 1106 KEFTMILVQMAVQARKEDVETSKK 1129
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +3
Query: 240 FRICHRPRSFRTKKNKKDTMESALSLAALSIPRKLLHQQEWRREKNALRGEEERKQSRL 416
F + +S + + T+E +S A +++ + +E R+E N + EEE+ Q R+
Sbjct: 2153 FNTSQKDKSDEKLSSPERTVEPEVSTATVNLDNMVALSKERRKENNETQEEEEQIQKRV 2211
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +3
Query: 240 FRICHRPRSFRTKKNKKDTMESALSLAALSIPRKLLHQQEWRREKNALRGEEERKQSRL 416
F + +S + + T+E +S A +++ + +E R+E N + EEE+ Q R+
Sbjct: 2153 FNTSQKDKSDEKLSSPERTVEPEVSTATVNLDNMVALSKERRKENNETQEEEEQIQKRV 2211
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFI 628
LFV ++ DT ++ L + F +GAI + ++ D + +GYAF+
Sbjct: 376 LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQ-QCKGYAFV 419
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/54 (33%), Positives = 18/54 (33%)
Frame = -3
Query: 351 GGGVSEGCSKQLRKAPTPSYPFCFFSCGSFAAGGRYGMGSRAANKANKFGGKNC 190
GGG GC AP P P C CG G G G GG C
Sbjct: 102 GGGCGGGC------APPPPPPACGGGCGGGGGGCGGGCGGGGGGGCGGGGGGGC 149
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHERD 649
+++ R+ SE + F GYG I+ + + G+ F+E++ +RD
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLL--------KNGFGFVEFDDKRD 48
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHERD 649
+++ R+ SE + F GYG I+ + + G+ F+E++ +RD
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLL--------KNGFGFVEFDDKRD 48
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 494 LFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKENGKPRGYAFIEYEHERD 649
+++ R+ SE + F GYG I+ + + G+ F+E++ +RD
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLL--------KNGFGFVEFDDKRD 48
>Z46242-12|CAA86332.1| 690|Caenorhabditis elegans Hypothetical
protein F35G12.3b protein.
Length = 690
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = -1
Query: 338 PRDAQSS*GKRRLHRILFVFFRAEASRPVADTEWGPGRQIKPINLVAKTASF*HSQITHH 159
PRD + GKRRL + F+ + R V+DT KP + +T S SQ+
Sbjct: 498 PRDRAQTDGKRRLPHESDIIFQQQHRRNVSDTSQISRSAFKPYS-SQQTTSKTSSQVVRS 556
Query: 158 I 156
+
Sbjct: 557 V 557
>Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical
protein F35G12.3a protein.
Length = 1077
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = -1
Query: 338 PRDAQSS*GKRRLHRILFVFFRAEASRPVADTEWGPGRQIKPINLVAKTASF*HSQITHH 159
PRD + GKRRL + F+ + R V+DT KP + +T S SQ+
Sbjct: 498 PRDRAQTDGKRRLPHESDIIFQQQHRRNVSDTSQISRSAFKPYS-SQQTTSKTSSQVVRS 556
Query: 158 I 156
+
Sbjct: 557 V 557
>AL132862-21|CAB70232.1| 476|Caenorhabditis elegans Hypothetical
protein Y73F8A.26 protein.
Length = 476
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Frame = +2
Query: 515 YDTSESKL-----RREFEG-YGAIKKIHMVYDKENGKPRGYAFIEYEHERDM 652
++TSE+ L R++ G + +IKK+ + +D E KP Y I Y H+ ++
Sbjct: 86 HETSETALCLLRCRKDMFGDHQSIKKMSVYHDLEERKPYQYMHICYYHQGEL 137
>AF256467-1|AAF71546.1| 690|Caenorhabditis elegans SEL-5B
serine/threonine kinase protein.
Length = 690
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = -1
Query: 338 PRDAQSS*GKRRLHRILFVFFRAEASRPVADTEWGPGRQIKPINLVAKTASF*HSQITHH 159
PRD + GKRRL + F+ + R V+DT KP + +T S SQ+
Sbjct: 498 PRDRAQTDGKRRLPHESDIIFQQQHRRNVSDTSQISRSAFKPYS-SQQTTSKTSSQVVRS 556
Query: 158 I 156
+
Sbjct: 557 V 557
>AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A
serine/threonine kinase protein.
Length = 1077
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = -1
Query: 338 PRDAQSS*GKRRLHRILFVFFRAEASRPVADTEWGPGRQIKPINLVAKTASF*HSQITHH 159
PRD + GKRRL + F+ + R V+DT KP + +T S SQ+
Sbjct: 498 PRDRAQTDGKRRLPHESDIIFQQQHRRNVSDTSQISRSAFKPYS-SQQTTSKTSSQVVRS 556
Query: 158 I 156
+
Sbjct: 557 V 557
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,120,325
Number of Sequences: 27780
Number of extensions: 266087
Number of successful extensions: 925
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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