Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_K03
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    28   0.069
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.0  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              21   7.9  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   7.9  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 28.3 bits (60), Expect = 0.069
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -3

Query: 351 GGGVSEGCSKQLRKAPTP--SYPFCFFSCGSFAAGGRY 244
           G G S+GC  + +K PTP      C   CG  A+G  Y
Sbjct: 163 GYGSSDGCDARKKKGPTPRQQEELCLV-CGDRASGYHY 199


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 533 KLRREFEGYGAIKKIHMVYD 592
           KLR E + YG +K +H+  D
Sbjct: 89  KLRWEPKEYGGVKMLHVPSD 108


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 533 KLRREFEGYGAIKKIHMVYD 592
           KLR E + YG +K +H+  D
Sbjct: 89  KLRWEPKEYGGVKMLHVPSD 108


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 531 LNSEENLKDMELSKRSIWSMTRKMENREV 617
           +N EEN ++       IW  T  M   E+
Sbjct: 59  INEEENFRNYGCFLACIWQQTGVMNGSEL 87


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 476 ADPFKTLFVARVNYDTSESKLRREFEGYGAIKKIHMVYDKEN 601
           A P+  +F   ++Y  +E+  +RE+ G GA+ +    Y+  N
Sbjct: 237 AQPY--IFQEVIDYG-NEAISKREYNGIGAVIEFKYSYEISN 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,895
Number of Sequences: 438
Number of extensions: 3352
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)