Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_J16
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   3.1  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   3.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.1  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    27   3.1  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    26   4.1  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    25   7.2  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    25   7.2  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   9.5  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/40 (32%), Positives = 15/40 (37%)
 Frame = +2

Query: 530 PSHCMEDXHXPRCTKHHMLRDIQPSPHPLHHHAMERDQPE 649
           P H     H P    HH   +  P P   HH   E + PE
Sbjct: 315 PMHHEPGEHMPPPPMHHEPGEHMPPPPFKHHELEEHEGPE 354


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +3

Query: 297 VPASVALGRVAVPGGARDRE 356
           V A+ ALGR+AVPGGA   E
Sbjct: 102 VLAAKALGRLAVPGGALTSE 121


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 23/83 (27%), Positives = 30/83 (36%)
 Frame = +1

Query: 202  AATTYMPAEMELGNIGGYHAASPRSAEPADMKYQHPLHSGGSPSPGAPVIGNPWTSLPPA 381
            AA   +P  + + NI     +SP S  P D     PL    S SP AP+       +PP 
Sbjct: 964  AAPPSIPPPLPVSNI----LSSPTSEPPKDHPPSAPLSKPVSTSPAAPL-----ARVPPV 1014

Query: 382  DPWAMXXXXXXXXXPDVKPPPAP 450
               +           D  P P P
Sbjct: 1015 PKLSSKAPPVPLPSADAPPIPVP 1037


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
            reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 87   GSGGGHLTSPGFDSERHARACATA 16
            G  G H+TSPG +S + AR  A A
Sbjct: 974  GVRGAHMTSPGDNSRQLARVVAAA 997


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 311 NGCWYFMSAGSALRGDAAWYPPMLPSSISA-GMYVVAAMAPYLRSTVD 171
           +G W  ++ GSA+R  A  Y     SSI+A  +Y  + +    RST D
Sbjct: 4   SGLWELITIGSAVRNVAKSYLKAEASSITAKQLYDASKITSSKRSTSD 51


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -2

Query: 606 GEGWMSLSIWCLVHRGQWXSSMQCDGRARTVMRADDGRVPAVGRMLQVAVVVRSRGRL 433
           G G  ++ +W  V  G+    +  D    TVM + DG+  A G + +V  +  S G L
Sbjct: 394 GSGDRTVCLWD-VEAGEQKLILHTDDGVTTVMFSPDGQFIAAGSLDKVIRIWTSSGTL 450


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 166 SCRLEGSRAFNWLILS 119
           S RLEGS +FNW  LS
Sbjct: 311 SSRLEGSVSFNWASLS 326


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +2

Query: 11  RAAVAHARACRSLSNPGDVRWPPPLPQRSATPAQFSRKNKPVEGS 145
           R+   H     S  N G+V   PPLPQRS T    S  N P+  +
Sbjct: 394 RSVSDHRILSSSTINDGEVA--PPLPQRSRT---ISSPNSPLSAT 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,617
Number of Sequences: 5004
Number of extensions: 47659
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)