Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_J16
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    28   0.090
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.27 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   1.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   2.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 27.9 bits (59), Expect = 0.090
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +1

Query: 451 HDHRHLQHAAHGWHAPVVSPHYGAGSPVTLHGGXP-LXAVHQTPY 582
           H H H+    H  H+   +PH+   +P+  H   P    +  TP+
Sbjct: 421 HGHSHIHATPHHHHSHAATPHHQHSTPLA-HSSYPAAIQIGHTPH 464


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 4/95 (4%)
 Frame = +2

Query: 380 PTPGRCTSI----THTHINQT*SLPRLLTTTATCSMRPTAGTRPSSARITVRARPSHCME 547
           P PG    I     H   + T SLP  +TTT T +   TA T  ++A  T          
Sbjct: 81  PVPGNLEQIGSRPLHPPASST-SLPATITTTTTTTTTTTA-TAAATATTTATGLIKQETL 138

Query: 548 DXHXPRCTKHHMLRDIQPSPHPLHHHAMERDQPEE 652
             H      HH L+      H   +   ++ Q  +
Sbjct: 139 QRHHHLQNHHHHLQSTAVQDHHRPYQQQQQQQQRQ 173



 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
 Frame = -2

Query: 90  CGSGGGHLTSPGFDSE------RHARACATA 16
           CG G   LT+PG DS+      R   A ATA
Sbjct: 370 CGGGPTILTTPGLDSDGIRLPCREVEAAATA 400



 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +2

Query: 368 HCHPPTPGR-CTSITHTHINQT*SLPRLLTTTATCSMRPTAGTRP 499
           H HP  PG   T+IT      T +     TTT   + +  + T P
Sbjct: 645 HSHPHEPGAPATTITTITTTTTTTTTTTTTTTTPNTTQNASATTP 689



 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +1

Query: 268  PRSAEPA--DMKYQHPLHSGGSPSPGAP 345
            PR A+ +  D  Y+ P  SGG P P  P
Sbjct: 1342 PRLAQDSSEDESYRGPSASGGRPVPERP 1369


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 142 LESLRAGK-TPSTVDLRYGAMAATTYMPAEMELGNIGGYHAASPRSAEPADM 294
           L++LR G  + +     +G  ++T Y  A  E   +     ASP +  PAD+
Sbjct: 474 LDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADL 525


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 471 LQVAVVVRSRGRLHVWLMCVCVMLVHRP 388
           L VAV  R R   ++++  + V ++HRP
Sbjct: 110 LSVAVYCRDRLNPNLFIYALSVAILHRP 137


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +2

Query: 17  AVAHARACRSLSNPGDVRWPPPLPQRSATPA 109
           AV    ACR   +P     PP LP   +  A
Sbjct: 435 AVNLGSACRIHGSPATTAAPPQLPTEESVDA 465


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 424 PDVKPPPAPHDHRHLQH 474
           PD++     H H+H QH
Sbjct: 11  PDLRNGGVEHPHQHQQH 27


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 350 ITGAPGDGDPPECNG 306
           IT   G+GDPPE NG
Sbjct: 520 ITSTFGNGDPPE-NG 533


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 44  SLSNPGDVRWPPPLPQRSA 100
           +L   GDV W PP   +S+
Sbjct: 139 TLKYTGDVSWKPPAIYKSS 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,594
Number of Sequences: 438
Number of extensions: 3940
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)