Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_J14
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    28   1.1  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    28   1.1  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    27   2.5  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   5.9  

>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 181 DLNEKRTMVVKGDMHIGGVMLKLTESFGKE 270
           ++++  T+   GD HIG ++ K  E  GKE
Sbjct: 174 EISQVATISANGDTHIGELLAKAMERVGKE 203


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 478 PFIQLCKNLGI-RHSEELSLCYPLEASH 558
           PF +LC +LG      E+++CYPL   H
Sbjct: 253 PFRRLCGSLGADTFYSEMAMCYPLMQGH 280


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 133 GEIVGDGSWNLTIYVTDLNEKRTMVVK 213
           GEI+G+GS++  +  T+ + KR   +K
Sbjct: 102 GEILGEGSYSTVLTATENSTKREYAIK 128


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
 Frame = +1

Query: 139  IVGDGSWNLTIYVTDLNEKRT-----MVVKGDMHIGGVMLKLT 252
            +V D S NL +   D     +     +V +GD HIG V+  +T
Sbjct: 1270 VVADTSGNLRLLAYDPENPESHSGERLVTRGDFHIGNVITAMT 1312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,158,045
Number of Sequences: 5004
Number of extensions: 41489
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)