Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_J14
(567 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75530-6|CAA99790.1| 720|Caenorhabditis elegans Hypothetical pr... 90 9e-19
AF217185-1|AAF20162.1| 720|Caenorhabditis elegans UNC-112 protein. 90 9e-19
Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z81086-3|CAD56586.1| 711|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr... 28 5.4
U41030-4|AAA82364.1| 547|Caenorhabditis elegans Hypothetical pr... 27 7.1
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ... 27 9.4
>Z75530-6|CAA99790.1| 720|Caenorhabditis elegans Hypothetical
protein C47E8.7 protein.
Length = 720
Score = 90.2 bits (214), Expect = 9e-19
Identities = 49/141 (34%), Positives = 78/141 (55%), Gaps = 4/141 (2%)
Frame = +1
Query: 124 LADGEIVGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVMLKLTESFGKEFKXDWSDHALW 303
L +G + DG W L I VTDLN +R++ V G++++GG+ML+L + + DWSDHALW
Sbjct: 4 LVEGTSIIDGKWQLPILVTDLNIQRSISVLGNLNVGGLMLELVSEC--DVERDWSDHALW 61
Query: 304 WPTRNXWLSSTKTHXXXXXXXXXXXXTLHAHAQTTKNPAAGLEIHRLQTLTSQLTHSAPF 483
WP + WL T++ T + A +++ +Q + +++ S
Sbjct: 62 WPEKRRWLQHTRSTLDQNGITAETQLEF-----TPMHKEARIQLPDMQMIDARVDFSVNS 116
Query: 484 I----QLCKNLGIRHSEELSL 534
+LC++LGIR+SEELSL
Sbjct: 117 FKATKKLCRDLGIRYSEELSL 137
Score = 50.4 bits (115), Expect = 9e-07
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = +2
Query: 338 KHTLDQYGVHADAALHFTPMHKPLRIQLPDLRFIDCK 448
+ TLDQ G+ A+ L FTPMHK RIQLPD++ ID +
Sbjct: 73 RSTLDQNGITAETQLEFTPMHKEARIQLPDMQMIDAR 109
>AF217185-1|AAF20162.1| 720|Caenorhabditis elegans UNC-112 protein.
Length = 720
Score = 90.2 bits (214), Expect = 9e-19
Identities = 49/141 (34%), Positives = 78/141 (55%), Gaps = 4/141 (2%)
Frame = +1
Query: 124 LADGEIVGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVMLKLTESFGKEFKXDWSDHALW 303
L +G + DG W L I VTDLN +R++ V G++++GG+ML+L + + DWSDHALW
Sbjct: 4 LVEGTSIIDGKWQLPILVTDLNIQRSISVLGNLNVGGLMLELVSEC--DVERDWSDHALW 61
Query: 304 WPTRNXWLSSTKTHXXXXXXXXXXXXTLHAHAQTTKNPAAGLEIHRLQTLTSQLTHSAPF 483
WP + WL T++ T + A +++ +Q + +++ S
Sbjct: 62 WPEKRRWLQHTRSTLDQNGITAETQLEF-----TPMHKEARIQLPDMQMIDARVDFSVNS 116
Query: 484 I----QLCKNLGIRHSEELSL 534
+LC++LGIR+SEELSL
Sbjct: 117 FKATKKLCRDLGIRYSEELSL 137
Score = 50.4 bits (115), Expect = 9e-07
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = +2
Query: 338 KHTLDQYGVHADAALHFTPMHKPLRIQLPDLRFIDCK 448
+ TLDQ G+ A+ L FTPMHK RIQLPD++ ID +
Sbjct: 73 RSTLDQNGITAETQLEFTPMHKEARIQLPDMQMIDAR 109
>Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical protein
C14B4.2 protein.
Length = 1776
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 121 MLADGEIVGDGSWNLTIYVTDLNEK 195
+ A G ++GD S NLTI+ T+++ K
Sbjct: 1244 LTASGHVLGDSSTNLTIHSTNIHSK 1268
>Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical protein
C14B4.2 protein.
Length = 1776
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 121 MLADGEIVGDGSWNLTIYVTDLNEK 195
+ A G ++GD S NLTI+ T+++ K
Sbjct: 1244 LTASGHVLGDSSTNLTIHSTNIHSK 1268
>Z81086-3|CAD56586.1| 711|Caenorhabditis elegans Hypothetical
protein F53B6.2b protein.
Length = 711
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 336 QNTPWTSTEFTRTPPYTSRPCTNH 407
++ W+ + R PP SRPC H
Sbjct: 150 KSVQWSQCDARRRPPEKSRPCNQH 173
>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
protein F53B6.2a protein.
Length = 1045
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 336 QNTPWTSTEFTRTPPYTSRPCTNH 407
++ W+ + R PP SRPC H
Sbjct: 484 KSVQWSQCDARRRPPEKSRPCNQH 507
>U41030-4|AAA82364.1| 547|Caenorhabditis elegans Hypothetical
protein C44C1.4a protein.
Length = 547
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 139 IVGDGSWNLTIYVTDLNEKRTMVVKGD-MHIGGVMLKLTESFGKEF 273
IVG ++ YV LNEKR G + + G + T+SF +EF
Sbjct: 491 IVGGATYEEAAYVRSLNEKRMQGYGGPAVVLAGSSMLNTKSFLEEF 536
>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform a protein.
Length = 1051
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +2
Query: 224 TSAALC*N*LRALVKSSRXIGRTMPSGGRLETNGSPAPKHTLDQYGVHADAALHFT 391
T++ C + L S+ I + S R +NGS + T D + +++ HFT
Sbjct: 218 TTSDSCTSSLAEEAASNSGIYKNQSSASRTNSNGSSTDRRTPDCHPINSGLKSHFT 273
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,194,512
Number of Sequences: 27780
Number of extensions: 246190
Number of successful extensions: 625
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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