Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_J13
(319 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 28 0.39
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 1.2
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 26 1.2
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch... 25 2.1
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 3.7
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 3.7
SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces pom... 25 3.7
SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c... 24 4.8
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 24 6.4
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 23 8.5
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 23 8.5
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 23 8.5
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 27.9 bits (59), Expect = 0.39
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 308 LTHSDRHIHNDIVELVMIIKAMNIYWFIN 222
L H+ H++ I+EL M +K + I WF +
Sbjct: 354 LEHTLPHLYQKIIELDMDLKLITINWFFS 382
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.2 bits (55), Expect = 1.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 111 IGALWPFQKVALPWILAVLDDSLIIFNQRTSLKRSVLIYKPVDVHCFY 254
+ L+P + P + +V D +F+QR+ L S IY+ + + FY
Sbjct: 297 VSTLYPVLSIICPTLYSVYKDIFDLFSQRSFLATS-KIYRRLCLRDFY 343
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 26.2 bits (55), Expect = 1.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 153 STVAPPSETATKHQYHFTMTSHIRISKNM 67
S V PS+T + +YH T+ I+I +++
Sbjct: 324 SIVVAPSQTLSDEEYHMLRTAAIKIIRHL 352
>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 25.4 bits (53), Expect = 2.1
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 189 NQRTSLKRSVLIYKPVDVHCFYYHN*FYYIIMYM 290
N ++ RSV+I +P+D++ H Y + +Y+
Sbjct: 315 NDKSETLRSVMIRQPMDLYIITDHGPSYGLYLYL 348
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 24.6 bits (51), Expect = 3.7
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = +3
Query: 45 IFAFHRTTCFWKFECVTSS*SDIGALWPFQKVALPWILAVLDD 173
+F+F W F +T +G WP +PW+ ++D+
Sbjct: 566 VFSFMALWSLWNF--ITM----LGTAWPAISYTVPWLRRLIDE 602
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 24.6 bits (51), Expect = 3.7
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -1
Query: 196 LWLKIINESSSTASIHGS 143
LWLK+++ + +SIHGS
Sbjct: 1363 LWLKLMDVAIKLSSIHGS 1380
>SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 24.6 bits (51), Expect = 3.7
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -1
Query: 223 ISTERLRLVLWLKIINESSSTASIHGSATF*NGHKAPISLHDDVTHS 83
+ + + L L ++I+++ T GSAT P+S+ ++VT S
Sbjct: 155 LQAQAMSLGLCARVIHDAGRTQIASGSATVLGIGPGPVSVINEVTGS 201
>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
2|||Manual
Length = 221
Score = 24.2 bits (50), Expect = 4.8
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +2
Query: 23 LGTVYPTHLCLSPHYMFLEIRMCDVIVK 106
+G + P HL PH + LE+ + +V+
Sbjct: 122 VGPIIPKHLIPDPHNVILELSLNGKVVQ 149
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 23.8 bits (49), Expect = 6.4
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 3/19 (15%)
Frame = +2
Query: 29 TVYP---THLCLSPHYMFL 76
TV+P + LC+SP YMF+
Sbjct: 414 TVFPFISSSLCISPRYMFV 432
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 23.4 bits (48), Expect = 8.5
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -3
Query: 317 NLXLTHSDRHIHNDIVELVMIIKAMNI 237
NL H R HN+++ + +++ +NI
Sbjct: 94 NLLYKHGWREAHNEMLTMQLLLMLLNI 120
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 23.4 bits (48), Expect = 8.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 180 LMSHQVPLVSTVAPPSETA 124
L+SH +S PPSET+
Sbjct: 391 LLSHYTETISQYLPPSETS 409
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 23.4 bits (48), Expect = 8.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 138 VALPWILAVLDDSLIIFNQRTSLKRSV 218
V + W VLD+ +I N R L ++V
Sbjct: 1484 VKIDWNYCVLDEGHVIKNARAKLTKAV 1510
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,146,801
Number of Sequences: 5004
Number of extensions: 19244
Number of successful extensions: 51
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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