Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_J13
         (319 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81015-5|CAB02661.1|  342|Caenorhabditis elegans Hypothetical pr...    27   2.2  
Z50045-2|CAA90363.2|  485|Caenorhabditis elegans Hypothetical pr...    27   2.9  
AF016675-2|AAB66139.1|  357|Caenorhabditis elegans Hypothetical ...    27   2.9  
Z46935-4|CAA87051.1|  270|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z18854-1|CAA79306.1|  270|Caenorhabditis elegans capping protein...    27   3.9  
Z18806-1|CAA79270.1|  270|Caenorhabditis elegans capping protein...    27   3.9  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    26   5.1  
Z67754-2|CAA91752.2|  677|Caenorhabditis elegans Hypothetical pr...    26   5.1  
Z19154-3|CAA79555.1|  291|Caenorhabditis elegans Hypothetical pr...    25   8.9  

>Z81015-5|CAB02661.1|  342|Caenorhabditis elegans Hypothetical
           protein C11E4.7 protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 177 MSHQVPLVSTVAPPSETATKHQYH 106
           MSH VP +  ++ PS   TKH  H
Sbjct: 119 MSHPVPSIPIISAPSIQQTKHPKH 142


>Z50045-2|CAA90363.2|  485|Caenorhabditis elegans Hypothetical
           protein F38B2.3 protein.
          Length = 485

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +2

Query: 44  HLCLSPHYMFLEIRMCDVIVK*YWCFVAVSEGGATVD 154
           H   +P   +LE+++ D  ++ Y  F+ + +G +T+D
Sbjct: 321 HTFYAPKGHYLEVQISDADIEKYHDFLKIYDGNSTID 357


>AF016675-2|AAB66139.1|  357|Caenorhabditis elegans Hypothetical
           protein T27B7.7 protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 165 LDDSLIIFNQRTSLKRSVLIYKPVDVHCFYYH 260
           +D  +I+F  R S  +SV I    D+  F YH
Sbjct: 100 VDHFMILFKNRNSFVQSVRIKNGRDIESFLYH 131


>Z46935-4|CAA87051.1|  270|Caenorhabditis elegans Hypothetical
           protein M106.5 protein.
          Length = 270

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -1

Query: 202 LVLWLKIINESSSTASIHGSATF*NGHKAPISLHDDVTH-SNFQKHVVR*KAKMR 41
           ++LWL+    SS   ++ GS T    H+    ++D  TH +N  + +   ++KMR
Sbjct: 172 IMLWLQTNKSSSGVMNLGGSLT--RQHEMDAPINDQNTHLANMGRMIEDQESKMR 224


>Z18854-1|CAA79306.1|  270|Caenorhabditis elegans capping protein
           beta subunit protein.
          Length = 270

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -1

Query: 202 LVLWLKIINESSSTASIHGSATF*NGHKAPISLHDDVTH-SNFQKHVVR*KAKMR 41
           ++LWL+    SS   ++ GS T    H+    ++D  TH +N  + +   ++KMR
Sbjct: 172 IMLWLQTNKSSSGVMNLGGSLT--RQHEMDAPINDQNTHLANMGRMIEDQESKMR 224


>Z18806-1|CAA79270.1|  270|Caenorhabditis elegans capping protein
           beta subunit protein.
          Length = 270

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -1

Query: 202 LVLWLKIINESSSTASIHGSATF*NGHKAPISLHDDVTH-SNFQKHVVR*KAKMR 41
           ++LWL+    SS   ++ GS T    H+    ++D  TH +N  + +   ++KMR
Sbjct: 172 IMLWLQTNKSSSGVMNLGGSLT--RQHEMDAPINDQNTHLANMGRMIEDQESKMR 224


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
           protein W01F3.3 protein.
          Length = 2175

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 165 VPLVSTVAPPSETATKHQYHFT 100
           V    T APP  T   +QYH+T
Sbjct: 139 VTTTETQAPPHHTTKPYQYHYT 160


>Z67754-2|CAA91752.2|  677|Caenorhabditis elegans Hypothetical
           protein C34E11.2 protein.
          Length = 677

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 28  NGLPNASLPFTALHVFGN 81
           NGLPNASLP+  ++  G+
Sbjct: 509 NGLPNASLPYNQINNAGS 526


>Z19154-3|CAA79555.1|  291|Caenorhabditis elegans Hypothetical
           protein C40H1.4 protein.
          Length = 291

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 72  FWKFECVTSS*SDIGALWPFQKVALPWILAVLDDSLIIFNQR 197
           F+K  C + + +D+ A W F   AL  I+ + D   II  +R
Sbjct: 116 FYKTLCYSCNPTDVAAFWSF-AFALSKIVELGDTMFIILRKR 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,316,668
Number of Sequences: 27780
Number of extensions: 107937
Number of successful extensions: 262
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)