Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_J05
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 143 2e-35
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 65 7e-12
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 65 7e-12
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 57 2e-09
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 57 2e-09
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 52 7e-08
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 50 3e-07
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 48 2e-06
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 28 1.0
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 27 1.8
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 3.1
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 25 7.1
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 25 9.4
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy... 25 9.4
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 143 bits (346), Expect = 2e-35
Identities = 70/144 (48%), Positives = 99/144 (68%)
Frame = +1
Query: 214 GT*RSPRNGNVLLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFIS 393
G + ++G VLL EMQIQ+PTAS IA+ LL+GELLKQA+++I
Sbjct: 50 GAIKLTKDGKVLLTEMQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIR 109
Query: 394 EGLHPRIITEGFDIARNKSLEVLESMKIPIEIARENLVDVARTSLKTKVHPSLADVLTDA 573
EGLHP +I++GF++A+N++L L+S K E+ RE L++VA+TSL TK+ + + L A
Sbjct: 110 EGLHPSLISDGFNLAKNEALTFLDSFKTDFEVDREVLLNVAKTSLSTKISSKVVESLAPA 169
Query: 574 CVDAVLTIRTPGKPVDLHMVEIME 645
VDA+LTIR P +P+DLHMVEIM+
Sbjct: 170 VVDAILTIRRPDEPIDLHMVEIMK 193
Score = 54.0 bits (124), Expect = 2e-08
Identities = 26/36 (72%), Positives = 31/36 (86%)
Frame = +2
Query: 68 ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLG 175
+SLLNPKAE + AQAL VNISAA G+QDV+K+NLG
Sbjct: 2 LSLLNPKAESIQRAQALQVNISAAIGLQDVLKSNLG 37
Score = 36.7 bits (81), Expect = 0.003
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +3
Query: 162 KLTLXPKGTMKMLVSGAGDIKITKEWQCFVT 254
K L P GT KMLV GAG IK+TK+ + +T
Sbjct: 33 KSNLGPTGTTKMLVDGAGAIKLTKDGKVLLT 63
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 65.3 bits (152), Expect = 7e-12
Identities = 38/139 (27%), Positives = 74/139 (53%), Gaps = 4/139 (2%)
Frame = +1
Query: 235 NGNVLLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRI 414
+G +L +M+++H A L+ + V+L G LL+QA+ I +G+HP
Sbjct: 75 DGATILDQMEVEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIR 134
Query: 415 ITEGFDIARNKSLEVLESMKIPIEIARENLVDV---ARTSLKTKVHPSLADVLTDACVDA 585
I +G++ A +++ L+++ ++ + EN ++ A+TSL +KV D + VDA
Sbjct: 135 IADGYEKACQVAVKHLDAISDVVDFSPENTTNLFRSAKTSLGSKVVSKAHDHFANIAVDA 194
Query: 586 VLTIR-TPGKPVDLHMVEI 639
VL++ K VD ++++
Sbjct: 195 VLSVADLQRKDVDFELIKV 213
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 65.3 bits (152), Expect = 7e-12
Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 3/140 (2%)
Frame = +1
Query: 235 NGNVLLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRI 414
+G +L + + HP A ++ V+L G +L A+ + +G+HP +
Sbjct: 60 DGATILKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTV 119
Query: 415 ITEGFDIARNKSLEVLESMKIPIEIA-RENLVDVARTSLKTKVHPSLADVLTDACVDAVL 591
I E F A +++ ++ + IE++ RE+L+ A TSL +K+ +++L VDAVL
Sbjct: 120 IAESFQRAAGFTVDCMKENALAIELSDRESLLRAATTSLNSKIVSQYSNLLAPIAVDAVL 179
Query: 592 TIRTP--GKPVDLHMVEIME 645
+ P VDL + I++
Sbjct: 180 KVIDPRVATNVDLKDIRIVK 199
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +3
Query: 162 KLTLXPKGTMKMLVSGAGDIKITKE 236
+ +L PKG KM+ +G G++ +T +
Sbjct: 36 RTSLGPKGMDKMIQTGKGEVILTND 60
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 57.2 bits (132), Expect = 2e-09
Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 7/139 (5%)
Frame = +1
Query: 247 LLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEG 426
++ E+++ HP A L+ V+ GELL +A+ I GL P I +G
Sbjct: 71 IIRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKG 130
Query: 427 FDIARNKSLEVLESM---KIPIEIARENLVDVARTSLKTKVHPSLADVLTDACVDAVLTI 597
+++A + ++EVLE + KI + + L+ RT + +K + + D L+D A+LT+
Sbjct: 131 YEMALSHTMEVLEEICADKIETVESEKELIKAIRTCISSKQYGN-EDFLSDLVAKAILTV 189
Query: 598 --RTPGK-PVD-LHMVEIM 642
+ P K VD + +V+IM
Sbjct: 190 LPKDPSKFNVDNIRVVKIM 208
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 57.2 bits (132), Expect = 2e-09
Identities = 27/125 (21%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Frame = +1
Query: 235 NGNVLLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRI 414
+G +L + ++HP ++ V++ ELL++A+ + +HP
Sbjct: 62 DGATILSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTT 121
Query: 415 ITEGFDIARNKSLEVL-ESMKIPIE-IARENLVDVARTSLKTKVHPSLADVLTDACVDAV 588
I G+ +A ++++ + + + ++ + +E+L++VA+TS+ +K+ + +D + VDA+
Sbjct: 122 IITGYRLAIREAVKFMTDVLSCSVDSLGKESLINVAKTSMSSKIIGNDSDFFSTMAVDAM 181
Query: 589 LTIRT 603
L+++T
Sbjct: 182 LSVKT 186
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 162 KLTLXPKGTMKMLVSGAGDIKITKE 236
K +L P G KMLV GD+ +T +
Sbjct: 38 KSSLGPVGLDKMLVDDIGDVTVTND 62
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 52.0 bits (119), Expect = 7e-08
Identities = 31/141 (21%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Frame = +1
Query: 235 NGNVLLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRI 414
+G +L + + + A ++ + ELL+QA+I ++ +HP++
Sbjct: 62 DGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQV 121
Query: 415 ITEGFDIARNKSLEVLESMKI-----PIEIARENLVDVARTSLKTKVHPSLADVLTDACV 579
I +G+ IA +++ L + I P + R +L ++ART+L +K+ + V
Sbjct: 122 IIDGYRIATKTAIDALRASSIDNSSDPAKF-RSDLENIARTTLSSKILSQNKNHFAQLAV 180
Query: 580 DAVLTIRTPGKPVDLHMVEIM 642
DAVL ++ ++ +++I+
Sbjct: 181 DAVLRLKGSTNLDNIQIIKIL 201
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 50.0 bits (114), Expect = 3e-07
Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Frame = +1
Query: 235 NGNVLLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRI 414
+G+ +L E+++ HP A + ++L GE+L A + +HP +
Sbjct: 60 DGHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVV 119
Query: 415 ITEGFDIARNKSLEVLESMKIPIEI-ARENLVDVARTSLKTKVHPSLADVLTDACVDAVL 591
+ F A +L +++ + +P+ + + + RT + TK+ +D++ + AV
Sbjct: 120 MIRSFKQALEDALSIIDEITLPVNVDDNAEMFRLIRTCIGTKLVARWSDLMCHLALRAVR 179
Query: 592 TI 597
T+
Sbjct: 180 TV 181
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 47.6 bits (108), Expect = 2e-06
Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 5/126 (3%)
Frame = +1
Query: 235 NGNVLLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRI 414
+G ++ + I HP A + V+ GELL++A F+ +G+ +
Sbjct: 65 DGATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHL 124
Query: 415 ITEGFDIARNKSLEVLESMKIPIEIA-----RENLVDVARTSLKTKVHPSLADVLTDACV 579
I G+ A ++ ++ + I ++++ R+ L A T++ +K+ S + T V
Sbjct: 125 IIRGYRKAAQLAVNKIKEIAIHLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVV 184
Query: 580 DAVLTI 597
DAVLT+
Sbjct: 185 DAVLTL 190
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 382 IFISEGLHPRIITEGFDIARNKSLEVLESMKI 477
+F+ E + I EGF IAR K +E LE +K+
Sbjct: 437 VFLLEEIVELCIAEGFLIARAKRVESLERVKV 468
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 586 PHQRKHQLAHLPSLGGP*F*VKY 518
PHQR H A L GGP F + Y
Sbjct: 63 PHQRAHNAAALARSGGPGFSMNY 85
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 26.6 bits (56), Expect = 3.1
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +2
Query: 8 TKEFPR*LIETEN---VLNEMAAISLLNPKAEFARAAQALAVNISAAKGIQ-DVMKTNLG 175
T PR IE E+ + + + L N + EF RAA+ +I+A + + ++ L
Sbjct: 105 TPATPRSRIEGESQTSAIPQTDRLILENHQQEFERAARRFRSSIAALRNLNTQNNQSTLA 164
Query: 176 SERHDENV 199
S DENV
Sbjct: 165 SNHEDENV 172
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/43 (25%), Positives = 27/43 (62%)
Frame = +1
Query: 442 NKSLEVLESMKIPIEIARENLVDVARTSLKTKVHPSLADVLTD 570
++SL++L+ + ++ ++ VD+ART ++ S ++V+ D
Sbjct: 270 SESLDLLDDFNYQVTVSNKSFVDIARTEYFITIY-SDSNVILD 311
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 397 GLHPRIITEGFDIARNKSLE-VLESMKIPIEIARENLVDVARTSLKTKVHPSLADVLTDA 573
G P +I E +A S + ++E + I+ + ++D + S + + ++AD+ D
Sbjct: 461 GRFPDVI-EVAQLALKHSCDFIIEGELVAIDKSNGQILDFQKLSTRERKKVTVADITIDV 519
Query: 574 CV 579
CV
Sbjct: 520 CV 521
>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +1
Query: 481 IEIARENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVE 636
I I L D++ T K VHPS++ L A + L +++ G + ++VE
Sbjct: 7 ILITPSPLSDISTTINKPNVHPSMS--LLKALPECRLVVKSKGDKNNANVVE 56
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,458,684
Number of Sequences: 5004
Number of extensions: 45312
Number of successful extensions: 127
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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