Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_I22
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    29   0.77 
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    26   4.1  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.2  
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    25   9.5  

>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 280 RRRYQTRPKPNNLQRLPLDEAAKRVMREMESLPTKTPVSVLQELLARRG 426
           R+RY+T+    N  +  +D+        +  L   TP+SVLQ LL + G
Sbjct: 287 RKRYETKKATFNRLKNTIDDFESGNYDALFILSIHTPMSVLQHLLPKLG 335


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 238 HGSGPNGEHIPHGPRRRYQTRPKPN 312
           HGSG +    P+G R  Y+T P  N
Sbjct: 310 HGSGSSNGVAPNGKRALYKTEPCKN 334


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 425 PRRANSSCKTETGVFVGSDSISRITL 348
           P+R++SSC T   +F+ S+S  RI +
Sbjct: 177 PKRSSSSCVTYVCLFLDSNSNPRINV 202


>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 277 PRRRYQTRPKPNNLQRLPLDEAAKRVMREMESLPTKTPVSVLQELLARRGTV-PKYEL 447
           P  R+    + NN Q L +DEA  + M +   +P        +E LA  G+  P Y+L
Sbjct: 188 PTDRFYRFNQRNNFQTLSIDEAEAK-MNKKTPIPRWFMKKESEENLAEAGSASPMYKL 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,987,519
Number of Sequences: 5004
Number of extensions: 66930
Number of successful extensions: 185
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)