Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_I18
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    26   4.0  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    25   9.3  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   9.3  

>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 630 NVYFYLASITTVVNIRVQIKHLIHS 556
           NV  ++ SI+  VNIR   KHL HS
Sbjct: 92  NVSNHVPSISKTVNIRETSKHLKHS 116


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 331 WMHSGVFFFQKTFCFCI 281
           W+++ +FF  + FCF I
Sbjct: 345 WVYACIFFLTRVFCFLI 361


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -1

Query: 189  RTLNVDRPRPMVARSRADRVIIF--SRFACCEYVSLNAXLGNLCRFHYVRSKLYK 31
            +T + D  R ++ + +AD VI+F   RF       +N  + NL    +V S  +K
Sbjct: 978  KTASTDESRSVLIKPKADNVILFRLKRFIMSS-EEINLDIPNLSTKQFVLSSGFK 1031


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,380,834
Number of Sequences: 5004
Number of extensions: 42927
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)