Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_I17
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067624-1|AAC17561.1| 152|Caenorhabditis elegans Arp2/3 comple... 96 2e-20
U88314-5|AAF99882.1| 146|Caenorhabditis elegans Hypothetical pr... 83 1e-16
Z38016-1|CAA86114.1| 856|Caenorhabditis elegans serine/threonin... 29 2.2
AL117207-1|CAB60406.1| 856|Caenorhabditis elegans Hypothetical ... 29 2.2
Z73911-2|CAC42338.2| 402|Caenorhabditis elegans Hypothetical pr... 29 3.8
U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast... 28 5.0
U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast... 28 5.0
U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast... 28 5.0
Z68880-9|CAA93099.1| 255|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z68879-12|CAA93091.1| 255|Caenorhabditis elegans Hypothetical p... 28 6.7
Z81481-1|CAB03947.1| 404|Caenorhabditis elegans Hypothetical pr... 27 8.8
>AF067624-1|AAC17561.1| 152|Caenorhabditis elegans Arp2/3 complex
component protein 7 protein.
Length = 152
Score = 95.9 bits (228), Expect = 2e-20
Identities = 52/140 (37%), Positives = 80/140 (57%), Gaps = 2/140 (1%)
Frame = +2
Query: 107 MAKNTLSSAFRKIDIDQYNEDNFKE-DEAEQAGPTGPDEGEVCSLLNQGRHIDALKLVLN 283
M+KN ++++RK+D+D ++ + + E DE GPDE V L+ R DAL L
Sbjct: 1 MSKNMQNTSYRKLDVDSFDPEQYDENDETVDTPGLGPDERAVQGFLSSNRLEDALHAALL 60
Query: 284 NAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSLSLDDIDNLMKYIYKGFEFPSEG 463
+ PL + +Q VK+ A L KVL + K+A+IE V LS+++ D LMKY+YK E ++
Sbjct: 61 SPPLKTKDQNVKDRATQLVTKVLQSFKNAEIEATVQKLSIEESDILMKYVYKSMEIGADA 120
Query: 464 S-SGHLLLWHDKAYSVGGLG 520
+ LL WH + + G G
Sbjct: 121 AVCQSLLAWHAQLVAKFGHG 140
>U88314-5|AAF99882.1| 146|Caenorhabditis elegans Hypothetical
protein C46H11.3 protein.
Length = 146
Score = 83.4 bits (197), Expect = 1e-16
Identities = 49/130 (37%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Frame = +2
Query: 134 FRKIDIDQYNEDNFKEDEAEQAGPTGPDEGEVCSLLNQGRHIDALKLVLNNAPLGSSNQQ 313
++K ++D ++ +F ED E++ GP+ EV L R AL+ VL N P G S Q+
Sbjct: 6 YKKYNVDIFHPAHF-EDIQEESADCGPNVQEVRQFLESNRLEYALQSVLLNPPFGHSEQE 64
Query: 314 VKENALTLTLKVLLAIKSAQIEEAVGSLSLDDIDNLMKYIYKGFEFPSEGSSG-HLLLWH 490
+K A+ L +V+ A + IEE+V LS ++ D LMKYIYK + S+ ++ LLLWH
Sbjct: 65 LKNRAVLLVAEVIHAFRQTDIEESVHKLSNENGDILMKYIYKAMQLCSDSATCLSLLLWH 124
Query: 491 DKAYSVGGLG 520
+ S G G
Sbjct: 125 SQLVSKFGQG 134
>Z38016-1|CAA86114.1| 856|Caenorhabditis elegans serine/threonine
kinase protein.
Length = 856
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/77 (23%), Positives = 36/77 (46%)
Frame = +2
Query: 233 SLLNQGRHIDALKLVLNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSLSLDDI 412
+++ +GR++D + + + N +N LT +K+L + S + E VG L +
Sbjct: 21 AIVYRGRYVDRTDVPVAIKAIAKKNISKSKNLLTKEIKILKELSSLKHENLVGLLKCTET 80
Query: 413 DNLMKYIYKGFEFPSEG 463
++Y EF + G
Sbjct: 81 PT---HVYLVMEFCNGG 94
>AL117207-1|CAB60406.1| 856|Caenorhabditis elegans Hypothetical
protein Y60A3A.1 protein.
Length = 856
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/77 (23%), Positives = 36/77 (46%)
Frame = +2
Query: 233 SLLNQGRHIDALKLVLNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSLSLDDI 412
+++ +GR++D + + + N +N LT +K+L + S + E VG L +
Sbjct: 21 AIVYRGRYVDRTDVPVAIKAIAKKNISKSKNLLTKEIKILKELSSLKHENLVGLLKCTET 80
Query: 413 DNLMKYIYKGFEFPSEG 463
++Y EF + G
Sbjct: 81 PT---HVYLVMEFCNGG 94
>Z73911-2|CAC42338.2| 402|Caenorhabditis elegans Hypothetical
protein T12A7.6 protein.
Length = 402
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 402 KDKLPTASSICADLIASNTFKVRV 331
KDK+PT S IC+ I ++ F+ R+
Sbjct: 28 KDKVPTLSEICSSSITTSLFQNRI 51
>U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform c protein.
Length = 317
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 425 KYIYKGFEFPSEGSSGHLLLWHDKAYSVGGLG 520
KY ++G +FPS +G +L H+ GG G
Sbjct: 241 KYFFQGPQFPSGPETGLMLQMHNLTLGTGGGG 272
>U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform b protein.
Length = 367
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 425 KYIYKGFEFPSEGSSGHLLLWHDKAYSVGGLG 520
KY ++G +FPS +G +L H+ GG G
Sbjct: 291 KYFFQGPQFPSGPETGLMLQMHNLTLGTGGGG 322
>U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform a protein.
Length = 444
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 425 KYIYKGFEFPSEGSSGHLLLWHDKAYSVGGLG 520
KY ++G +FPS +G +L H+ GG G
Sbjct: 368 KYFFQGPQFPSGPETGLMLQMHNLTLGTGGGG 399
>Z68880-9|CAA93099.1| 255|Caenorhabditis elegans Hypothetical
protein K08F4.9 protein.
Length = 255
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 173 SCLHCIDLCLFSGMLSLKYFLP 108
S LHCID+ S +L+ ++FLP
Sbjct: 107 SVLHCIDVNAVSALLASQHFLP 128
>Z68879-12|CAA93091.1| 255|Caenorhabditis elegans Hypothetical
protein K08F4.9 protein.
Length = 255
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 173 SCLHCIDLCLFSGMLSLKYFLP 108
S LHCID+ S +L+ ++FLP
Sbjct: 107 SVLHCIDVNAVSALLASQHFLP 128
>Z81481-1|CAB03947.1| 404|Caenorhabditis elegans Hypothetical
protein C38D9.1 protein.
Length = 404
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +2
Query: 305 NQQVKENALTLTLKVLLAIKSAQIEEAVGSLSLDDIDNLMKY 430
++Q++EN L VL ++ ++ + V L ++ID ++ Y
Sbjct: 228 SEQIRENIFNDVLNVLRSMNKLRVRKLVCELKNEEIDAILPY 269
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,673,228
Number of Sequences: 27780
Number of extensions: 269193
Number of successful extensions: 675
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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