Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_I12
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0147 - 14095039-14095937,14096914-14097379 29 2.4
07_03_1180 - 24601631-24602142,24602518-24602581,24602811-246028... 29 3.2
01_01_0272 - 2249662-2249721,2250110-2250335,2250419-2250615,225... 29 3.2
05_07_0310 + 29135875-29136052,29136206-29136617,29136723-291368... 29 4.3
06_01_0867 - 6600847-6601413,6601954-6602181 28 5.6
05_07_0051 - 27338512-27338617,27338790-27338950 28 5.6
05_03_0255 + 11100083-11100158,11100244-11100391,11101372-111015... 28 5.6
04_04_1400 - 33259716-33260069,33260172-33260219,33260471-332605... 28 5.6
12_02_0310 - 17358220-17358834 28 7.5
09_06_0184 - 21413275-21414267 28 7.5
09_04_0346 - 16883380-16883487,16883570-16883685,16883935-168841... 28 7.5
02_05_0734 + 31318380-31318610,31319422-31319988 28 7.5
02_03_0190 + 16188329-16188514,16188552-16188885,16190275-161907... 28 7.5
06_03_0248 - 18696184-18696199,18696920-18697314 27 9.9
04_01_0583 + 7563290-7563904 27 9.9
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508... 27 9.9
>11_04_0147 - 14095039-14095937,14096914-14097379
Length = 454
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 388 GTNVDSDSLSKVLRGLGFSVTVLH-NLRAED 477
G + L+ VLR GFS+TVLH LRA D
Sbjct: 17 GHTIPMFHLAAVLRSRGFSITVLHTELRAPD 47
>07_03_1180 -
24601631-24602142,24602518-24602581,24602811-24602876,
24602949-24603070,24603170-24603344,24603466-24603701,
24603781-24604129,24605009-24605146,24605242-24605289
Length = 569
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Frame = +1
Query: 172 KKNNGSGTEQRKNGNEDEGDAWGSHG---SSQGRRYAKMPVERYAHYYNMNHNNRG 330
+ NG G Q NG GD + +G + G RY + E Y + H G
Sbjct: 475 QNGNGGGYHQNGNGYHQNGDGYHQNGNRYNQNGNRYHQNGDEYYQNGNGNGHRQNG 530
>01_01_0272 -
2249662-2249721,2250110-2250335,2250419-2250615,
2250707-2250955,2251047-2251176,2251473-2251564,
2251735-2251855,2251940-2252028,2252149-2252271,
2252379-2252506,2253039-2253147,2253701-2254000
Length = 607
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 184 GSGTEQRKNGNEDEGDAWGSHGSSQGRRYAKMPVERYAH 300
GSG+ ++ NG + S GS G++ K R+ H
Sbjct: 541 GSGSRKKSNGKHENSSDDDSDGSCDGKKKKKAKKTRFTH 579
>05_07_0310 +
29135875-29136052,29136206-29136617,29136723-29136867,
29137944-29138102,29138183-29138242,29138349-29138546
Length = 383
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 154 KMADEEKKNNGSGTEQRKNGNEDEGDAWGSHGSSQGRRYAKMPV 285
K A+ E+ N R G D G +G + + GRR A PV
Sbjct: 327 KPAEGERYYNPGRGRGRGRGRGDRGGFYGGYNGNGGRRQAAAPV 370
>06_01_0867 - 6600847-6601413,6601954-6602181
Length = 264
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = -1
Query: 406 HCPHWCPCEILDYEFQNVHD*K*SPYHDYCGSCYSNERIFRQAF 275
HC W P IL F N S YHD Y N+ F Q F
Sbjct: 186 HCGLWLPGNILHVFFSNN-----SAYHDIHHQLYGNKYNFSQPF 224
>05_07_0051 - 27338512-27338617,27338790-27338950
Length = 88
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 190 GTEQRKNGNEDEGDAWGSHGSSQGRRYAKMPVE 288
G Q NG E EG GS+ GRR+ +M E
Sbjct: 55 GVPQSVNGEETEGIGRRRGGSNDGRRHGEMAPE 87
>05_03_0255 +
11100083-11100158,11100244-11100391,11101372-11101559,
11101648-11101819,11102637-11102839,11103640-11103762,
11103838-11103941,11105579-11105713
Length = 382
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = -2
Query: 99 KMEFLIYV--DVVKMESVKNNNKNYHD 25
K+ F+I+V +ES++NNNKNY D
Sbjct: 222 KVNFVIFVVNGASVLESIENNNKNYID 248
>04_04_1400 -
33259716-33260069,33260172-33260219,33260471-33260596,
33260850-33260900,33260963-33261055,33261217-33261272,
33261465-33261522,33262306-33262365,33262513-33262623,
33263368-33263949,33264026-33264097
Length = 536
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +1
Query: 154 KMADEEKKNNGSGTEQRKNGNEDEGDAWGSHGSSQGRRYAKMPVER 291
K+ + +++ G G+E +ED+ D GS S + ER
Sbjct: 126 KVGGDREEDKGGGSESGSGSDEDDSDGSGSDDSEDSEEERRREEER 171
>12_02_0310 - 17358220-17358834
Length = 204
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +1
Query: 181 NGSGTEQRKNGNEDEGDAWGSHGSSQGRRYAKMPVERYA 297
+G G + R G E GD G G +M VER A
Sbjct: 81 DGGGEDGRDGGREGSGDGGGEGGGEVEAATVEMAVERTA 119
>09_06_0184 - 21413275-21414267
Length = 330
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +1
Query: 160 ADEEKKNNGSGTEQRKNGNEDE---GDAWGSHGSSQGRRYA 273
AD++ + GSG E EDE GD HG Q Y+
Sbjct: 127 ADDDDQGGGSGQEAGGGNGEDEAGGGDDSNGHGDEQDGDYS 167
>09_04_0346 -
16883380-16883487,16883570-16883685,16883935-16884119,
16884370-16884486,16884795-16884850
Length = 193
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Frame = +2
Query: 158 WLMKKRKTMALEQNKGKTAMKTK-------ATH-GAVMDLHKDDVMR 274
WL KKR+T +Q KGK +K A H GA+ + +D V R
Sbjct: 136 WLDKKRRTRTRQQGKGKKGKSSKEQNNGGDADHVGAMAQMVEDSVSR 182
>02_05_0734 + 31318380-31318610,31319422-31319988
Length = 265
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = -1
Query: 406 HCPHWCPCEILDYEFQNVHD*K*SPYHDYCGSCYSNERIFRQAF 275
HC W P IL F N S YHD Y N+ F Q F
Sbjct: 187 HCGLWLPGNILHALFNNN-----SAYHDIHHQLYGNKYNFSQPF 225
>02_03_0190 +
16188329-16188514,16188552-16188885,16190275-16190745,
16191055-16191249,16191519-16191643,16192082-16192142,
16192774-16193023,16193129-16193279,16193594-16193902
Length = 693
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 178 NNGSGTEQRKNGNEDEGDAWGSHGSSQ 258
+ G+GT Q+ NGN G++ S SS+
Sbjct: 331 DKGNGTNQQANGNSSTGNSSSSQSSSK 357
>06_03_0248 - 18696184-18696199,18696920-18697314
Length = 136
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = +1
Query: 169 EKKNNGSGTEQRKNGNEDEGDAWGSHGSSQGRRYAKMPVERYA 297
E G G E G E GD G G KM VER A
Sbjct: 72 EGGGGGGGGEGGDGGREGSGDGGGEGGGEVEAATVKMAVERTA 114
>04_01_0583 + 7563290-7563904
Length = 204
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +1
Query: 184 GSGTEQRKNGNEDEGDAWGSHGSSQGRRYAKMPVERYA 297
G G + R G E GD G G +M VER A
Sbjct: 82 GGGEDGRDGGREGSGDGGGEGGGEVEAATVEMSVERTA 119
>03_02_0025 +
5084003-5084303,5084449-5084639,5084793-5084873,
5084972-5085319,5085409-5086293
Length = 601
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 163 DEEKKNNGSGTEQRKNGNEDEGDAWG 240
+EE++ +G G E + E+EGD WG
Sbjct: 553 EEEEQEDGRGDEPKPRREEEEGD-WG 577
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,208,290
Number of Sequences: 37544
Number of extensions: 318020
Number of successful extensions: 973
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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