Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_I09
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual 67 2e-12
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe... 31 0.19
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 27 1.8
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 26 4.1
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 4.1
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 7.2
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 25 7.2
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 25 7.2
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 9.5
>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
Length = 231
Score = 66.9 bits (156), Expect = 2e-12
Identities = 39/101 (38%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Frame = +2
Query: 236 LNERQDRHERLVKLSRDITIESKRIIFLLHSAITEESTAKVIE-EAKERFQKLIKGPIKS 412
L E QD+ E++++LSR+ITI+SKR+IFLLH + + + + F+K I ++S
Sbjct: 12 LQEDQDKREKIIRLSREITIQSKRMIFLLHQTSSSDGFPLPKDFDRTSIFEKKIHKELES 71
Query: 413 VGLELENSPAYLHSRAVTAGFQEYIEARTLFSLMETKKLIS 535
+ EL A S A T G QEY+EA T ++T L+S
Sbjct: 72 LKRELAGLNADKFSSACTHGLQEYVEAVTFKFWLQTGTLLS 112
>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 30.7 bits (66), Expect = 0.19
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +2
Query: 194 DSPILAMFKNAALKLNERQDRHERLVKLSRDITIESKRIIFLLHSAITEESTAKVIEEAK 373
D P + ALK N ++ VKL+RD + I+ ++ I AK I++AK
Sbjct: 61 DGPTICKGNEIALKNNITLEKVFETVKLARDAGVTIPIILMGYYNPIFSYGDAKTIQKAK 120
Query: 374 E 376
E
Sbjct: 121 E 121
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 353 KVIEEAKERFQKLIKGPIKSVGLELENSPAYLH 451
K EE K++ Q L + KSV ++L+ P Y H
Sbjct: 217 KAKEETKQKLQDLYE-EFKSVAVDLQGDPKYQH 248
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/51 (23%), Positives = 28/51 (54%)
Frame = +2
Query: 53 SLIFIRIAFVR*YWFKMSGRGRQRSYRNRNQQTLSTVAREAAASLAPDSPI 205
+L+F ++ + W+ + Q ++RN++++ + + +SL PDS I
Sbjct: 11 ALLFGQLLPPKYSWYSVKRWQSQLTFRNKSKRNTNRIMLSVVSSLNPDSLI 61
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 197 SPILAMFKNAALKLNERQDRHERLVKLSR 283
S ++ F+ +L+L E+Q R E L+K R
Sbjct: 1408 SSLVRRFEELSLQLQEKQKRDEELIKARR 1436
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.4 bits (53), Expect = 7.2
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Frame = -1
Query: 642 TQACSPNVIPXV----ITVLFWSLSASGMLKTN-SSRISGQLISFLVSIRENKVLASMYS 478
T C P +I I + L + ++KT+ +R+S + LVS + + A +++
Sbjct: 665 TSICDPCIIVVFLGGGIALYKMDLKSQRLIKTDLQNRLSDVKTASLVSPDSSALFAKLFT 724
Query: 477 WKPAVTARECKYAGLFSSSKPTDL 406
+ + A+ G+ S+ TDL
Sbjct: 725 YNETLNAKGQIANGMNDSASETDL 748
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -3
Query: 127 TSLPSSS*HLEPVLADEGDS 68
T+ P +S ++EPVLAD+ D+
Sbjct: 1095 TNQPGASENVEPVLADDSDA 1114
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 25.4 bits (53), Expect = 7.2
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 1/116 (0%)
Frame = +2
Query: 152 LSTVAREAAASLAPD-SPILAMFKNAALKLNERQDRHERLVKLSRDITIESKRIIFLLHS 328
LS+ R + PD P++A F + +D + R R+ +++++R HS
Sbjct: 459 LSSTPRSNSTITYPDMDPMVASFSSQYSHKTLDRDINSRSY-FDREPSLDAERF----HS 513
Query: 329 AITEESTAKVIEEAKERFQKLIKGPIKSVGLELENSPAYLHSRAVTAGFQEYIEAR 496
+ S V E++ F L + K G NSP R E+ E++
Sbjct: 514 RSVDASPKAVRRESRSFFPSLTRKRSKFFGSSQSNSPKDSPLRDTHKSSDEHSESK 569
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/65 (23%), Positives = 32/65 (49%)
Frame = +2
Query: 146 QTLSTVAREAAASLAPDSPILAMFKNAALKLNERQDRHERLVKLSRDITIESKRIIFLLH 325
+ +S + + + L P ++ FK+ + + RH++L + ++ IE ++ FLL
Sbjct: 116 KNISNASNQNSGKLNPQLFVIEAFKH--MSKAKATKRHKKLREAINNVQIELQKQPFLLP 173
Query: 326 SAITE 340
I E
Sbjct: 174 EVILE 178
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,145,521
Number of Sequences: 5004
Number of extensions: 36654
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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