Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_I02
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    25   7.3  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   7.3  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   9.6  

>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 342 VNLLHSKRKGIFIHPTAMYRNNL 410
           V LL SK K +F+HPT+  ++N+
Sbjct: 29  VALLFSKSK-VFVHPTSKMKDNI 50


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -2

Query: 203 MARVTSLFRMQKHNGYFQKPKSIEDIV 123
           MA +TS+ R++KH  +FQ+ + ++  +
Sbjct: 309 MAFLTSVIRIRKHAEFFQQDQVLQQFI 335


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = +3

Query: 234  INTSTATSKTILFSFFVMFPHFIRAEEEQKSNLIPSVNLLHSKRKGIFIHPTAMYRNNLW 413
            I T T    TIL + F+ F H+ R  +EQ   +   V      RK + +     Y ++ +
Sbjct: 1471 IITVTDDVATILHAAFIQFDHYSRIVQEQCQQIFQYV-----VRKVLAMEGRLDY-DDAY 1524

Query: 414  CSININAPIITSL 452
               N+ + +IT L
Sbjct: 1525 FDFNVESSLITGL 1537


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,768
Number of Sequences: 5004
Number of extensions: 56093
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)