Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_I01
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1143 - 10711023-10711884,10713603-10713826,10714253-107145... 207 5e-54
06_01_0493 - 3536207-3537056,3537603-3537826,3538234-3538503,353... 206 2e-53
05_07_0285 + 28982502-28982782,28982888-28982989,28983189-289840... 31 0.79
07_01_1013 - 8593690-8595006,8595275-8595928,8595951-8596065,859... 29 2.4
05_01_0245 - 1829921-1830359,1830449-1831002,1832016-1832144,183... 28 7.4
12_02_0720 - 22510996-22512949,22513752-22514533 27 9.7
11_06_0110 + 20212221-20214011,20214072-20214368 27 9.7
07_03_1728 + 29076733-29079069 27 9.7
04_04_1614 + 34786296-34786315,34787432-34788347,34788426-347889... 27 9.7
>07_01_1143 -
10711023-10711884,10713603-10713826,10714253-10714522,
10715071-10715175
Length = 486
Score = 207 bits (506), Expect = 5e-54
Identities = 91/154 (59%), Positives = 117/154 (75%), Gaps = 2/154 (1%)
Frame = +3
Query: 186 WEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRPFTVFRWCPGARMRFKKTEICQTC 365
WE +DFPI+C++CLGDNPY+RM + +Y KECKIC+RPFTVFRW PG R+KKTEICQTC
Sbjct: 14 WERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGRDARYKKTEICQTC 73
Query: 366 SKLKNVCQTCLLDLEYGLPIQVRDAALKV--QDDLPRNEVNKEYYIQNLESQLSNSDPTQ 539
KLKNVCQ CLLDLEYGLP+QVRD AL D +PR++VN+EY+ + + +
Sbjct: 74 CKLKNVCQVCLLDLEYGLPVQVRDTALSTNSNDAIPRSDVNREYFAEEHDRRARAGIDYD 133
Query: 540 PTNSLKSKGSSDLLVRLARTAPYYKRNXPHVCSF 641
+N K++ ++D +++L RTAPYYKRN HVCSF
Sbjct: 134 SSNG-KAR-ANDTILKLQRTAPYYKRNRAHVCSF 165
>06_01_0493 -
3536207-3537056,3537603-3537826,3538234-3538503,
3539042-3539146
Length = 482
Score = 206 bits (502), Expect = 2e-53
Identities = 90/154 (58%), Positives = 118/154 (76%), Gaps = 2/154 (1%)
Frame = +3
Query: 186 WEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRPFTVFRWCPGARMRFKKTEICQTC 365
WE +DFPI+C++CLGDNPY+RM + +Y KECKIC+RPFTVFRW PG R+KKTEICQTC
Sbjct: 14 WERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGRDARYKKTEICQTC 73
Query: 366 SKLKNVCQTCLLDLEYGLPIQVRDAALKV--QDDLPRNEVNKEYYIQNLESQLSNSDPTQ 539
KLKNVCQ CLLDLEYGLP+QVRD AL + D +PR++VN+EY+ + + + +
Sbjct: 74 CKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDAIPRSDVNREYFAEE-HDRKARAGIDY 132
Query: 540 PTNSLKSKGSSDLLVRLARTAPYYKRNXPHVCSF 641
++ K++ +D +++L RTAPYYKRN HVCSF
Sbjct: 133 DSSHGKAR-PNDTILKLQRTAPYYKRNRAHVCSF 165
>05_07_0285 +
28982502-28982782,28982888-28982989,28983189-28984006,
28984594-28985050,28985203-28985242
Length = 565
Score = 31.1 bits (67), Expect = 0.79
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 114 SKIISXKGHAMATSKSTNTYNRQNWEDADFPILCQTCLGD 233
SK + KG +AT+ +TN Y RQ +++ I Q C D
Sbjct: 144 SKQVITKGGILATTATTNLYRRQRYKEGMKDIQSQCCSPD 183
>07_01_1013 -
8593690-8595006,8595275-8595928,8595951-8596065,
8596560-8596861,8596884-8597369
Length = 957
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -1
Query: 483 CLLRFEVGHPELLMQHLSLGLADHIPNPINMF 388
C LRF GHPEL + L G+ DH+ MF
Sbjct: 315 CCLRFFQGHPEL--RKLKNGMPDHLDELDRMF 344
>05_01_0245 -
1829921-1830359,1830449-1831002,1832016-1832144,
1832249-1832339,1832646-1832758,1832836-1833079,
1833193-1833281,1833357-1833424,1833790-1833874,
1834038-1834190
Length = 654
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +3
Query: 414 GLPIQVRDAALKVQDDL--PRNEVNKEYYIQNLESQLSNS 527
GLP +R+A K++ P+N EYY+ + +LS S
Sbjct: 160 GLPKDLREARKKIKFPTVSPKNSATPEYYVTEVLPKLSKS 199
>12_02_0720 - 22510996-22512949,22513752-22514533
Length = 911
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +3
Query: 78 RSVLFDRLSCVESKIISXKGHAMATS--KSTNTYNR 179
R + +D +++ +I KGH +ATS K TN +N+
Sbjct: 63 RELSYDIEDAIDTFMIKGKGHELATSFKKVTNLFNK 98
>11_06_0110 + 20212221-20214011,20214072-20214368
Length = 695
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 339 KKTEICQTCSKLKNVCQTCLLDLEYGL 419
KK +C + LKN+C +LDL+Y L
Sbjct: 315 KKGNMCIMKANLKNLCNLEVLDLDYRL 341
>07_03_1728 + 29076733-29079069
Length = 778
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 393 CLLDLEYGLPIQVRDAALKVQDDLPR 470
C L EY LPI VR+++L+ DLPR
Sbjct: 623 CTLVGEYVLPIIVRNSSLQSCRDLPR 648
>04_04_1614 +
34786296-34786315,34787432-34788347,34788426-34788950,
34789065-34789442,34790435-34790740
Length = 714
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +3
Query: 447 KVQDDLPRNEVNKEYYIQNLESQLSNSDPTQPTNSLKSKGSS 572
KVQ +L + + I+N ESQL NS+ Q NSL K +
Sbjct: 509 KVQQELKFVKSQMDQIIKNFESQLKNSELEQ-YNSLMRKAEA 549
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,185,443
Number of Sequences: 37544
Number of extensions: 350502
Number of successful extensions: 758
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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