Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_H24
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    31   0.19 
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    27   1.8  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   7.2  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    25   7.2  
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo...    25   9.5  
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    25   9.5  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.5  

>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
 Frame = -2

Query: 391 LTSSCPS-----TCGPTPGCT*SFPTRPISLFGMVKVEYIQQYVSITASGI--SSTMQSI 233
           L ++CP      T GP PG T  +PT  ++        Y     S+++S I  +ST+ + 
Sbjct: 36  LLAACPQYITIYTNGPVPGTTTIYPTSNVASNTSENYPYTGS-KSLSSSSILSNSTISTS 94

Query: 232 GSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTESSLRSPFTEPKTSNMAGA 71
            S      V  S + +   T+       T  S  T SS+ S  T P +S+++ +
Sbjct: 95  SSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTIPSSSSISAS 148


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = -2

Query: 304 VKVEYIQQYVSITASGISSTMQSIGSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTE 125
           V  EYI++ ++   S    T+  I + +Y   +   E   + +     C RNTLLS+H  
Sbjct: 145 VGAEYIKKVIARLQSYDRRTLDQIAAKLYFYYILFFEKCNRSVE----C-RNTLLSVHRT 199

Query: 124 SSLR 113
           +SLR
Sbjct: 200 ASLR 203


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +3

Query: 411 WVCFVLFFQAILFYVP---RYLWKTWEGGRIKMLV 506
           WV   L+F+AI+  VP     L+ T +GG++++ V
Sbjct: 51  WVVTDLYFKAIIHVVPGDNTILFTTDDGGKLELQV 85


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 428 ILSSNPVLCSPLLVENVGRRPHQDVGPGS 514
           I S NP L S     N+ RR   D GP S
Sbjct: 364 IPSENPQLQSGFTTPNLSRRNSSDFGPNS 392


>SPCC576.10c |rpt3||19S proteasome regulatory subunit
           Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 389

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/34 (26%), Positives = 22/34 (64%)
 Frame = +3

Query: 465 LWKTWEGGRIKMLVLDLNCPIVEDECKSGRKKLL 566
           L+  W+    ++ +LDL    ++++CKS +++L+
Sbjct: 9   LYNRWKALERQLEMLDLQEGFIKEDCKSLKRELI 42


>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 460

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 6/25 (24%), Positives = 14/25 (56%)
 Frame = +3

Query: 363 PHVEGQDEVKYHKYYQWVCFVLFFQ 437
           P ++  D+ K+H+   W+    +F+
Sbjct: 328 PFIKNNDKTKFHQNIDWIALEKYFE 352


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -1

Query: 365 WADAGLHVILSDAADKSVRDGESRVYPAVRVHNSERDFINDAVNRVTD 222
           WA    +++ S+ A  SV    ++        NS++ F ND  N +TD
Sbjct: 96  WA-RDFNILTSNFASSSVTSAPTQSSHISNFTNSQKYFANDLPNSLTD 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,339
Number of Sequences: 5004
Number of extensions: 55366
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)