Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_H22
         (603 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC008863-1|AAH08863.1|  346|Homo sapiens polymerase (RNA) I poly...    65   2e-10
BC008118-1|AAH08118.1|  338|Homo sapiens POLR1C protein protein.       65   2e-10
AL355802-13|CAI42630.1|  139|Homo sapiens RP3-337H4.4 protein.         65   2e-10
AL355802-12|CAI42629.1|  346|Homo sapiens RP3-337H4.4 protein.         65   2e-10
AL355802-11|CAI42628.1|  314|Homo sapiens RP3-337H4.4 protein.         65   2e-10
AF008442-1|AAC14354.1|  346|Homo sapiens RNA polymerase I subuni...    65   2e-10
AL355802-10|CAI42627.1|   99|Homo sapiens RP3-337H4.4 protein.         53   9e-07

>BC008863-1|AAH08863.1|  346|Homo sapiens polymerase (RNA) I
           polypeptide C, 30kDa protein.
          Length = 346

 Score = 64.9 bits (151), Expect = 2e-10
 Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
 Frame = +1

Query: 250 KPRVFLEEFRVKNA-----PEDYGLDDETWDXXXXXXXXXXXXXRMDNFEMEFDLIGIQP 414
           + RV L EF V+N      P +Y   D+ WD              MD   +EFD++GI  
Sbjct: 11  RSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDA 70

Query: 415 AFANAFRKLMLSEVPSMAIEK 477
           A ANAFR+++L+EVP+MA+EK
Sbjct: 71  AIANAFRRILLAEVPTMAVEK 91


>BC008118-1|AAH08118.1|  338|Homo sapiens POLR1C protein protein.
          Length = 338

 Score = 64.9 bits (151), Expect = 2e-10
 Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
 Frame = +1

Query: 250 KPRVFLEEFRVKNA-----PEDYGLDDETWDXXXXXXXXXXXXXRMDNFEMEFDLIGIQP 414
           + RV L EF V+N      P +Y   D+ WD              MD   +EFD++GI  
Sbjct: 3   RSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDA 62

Query: 415 AFANAFRKLMLSEVPSMAIEK 477
           A ANAFR+++L+EVP+MA+EK
Sbjct: 63  AIANAFRRILLAEVPTMAVEK 83


>AL355802-13|CAI42630.1|  139|Homo sapiens RP3-337H4.4 protein.
          Length = 139

 Score = 64.9 bits (151), Expect = 2e-10
 Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
 Frame = +1

Query: 250 KPRVFLEEFRVKNA-----PEDYGLDDETWDXXXXXXXXXXXXXRMDNFEMEFDLIGIQP 414
           + RV L EF V+N      P +Y   D+ WD              MD   +EFD++GI  
Sbjct: 10  RSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDA 69

Query: 415 AFANAFRKLMLSEVPSMAIEK 477
           A ANAFR+++L+EVP+MA+EK
Sbjct: 70  AIANAFRRILLAEVPTMAVEK 90


>AL355802-12|CAI42629.1|  346|Homo sapiens RP3-337H4.4 protein.
          Length = 346

 Score = 64.9 bits (151), Expect = 2e-10
 Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
 Frame = +1

Query: 250 KPRVFLEEFRVKNA-----PEDYGLDDETWDXXXXXXXXXXXXXRMDNFEMEFDLIGIQP 414
           + RV L EF V+N      P +Y   D+ WD              MD   +EFD++GI  
Sbjct: 11  RSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDA 70

Query: 415 AFANAFRKLMLSEVPSMAIEK 477
           A ANAFR+++L+EVP+MA+EK
Sbjct: 71  AIANAFRRILLAEVPTMAVEK 91


>AL355802-11|CAI42628.1|  314|Homo sapiens RP3-337H4.4 protein.
          Length = 314

 Score = 64.9 bits (151), Expect = 2e-10
 Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
 Frame = +1

Query: 250 KPRVFLEEFRVKNA-----PEDYGLDDETWDXXXXXXXXXXXXXRMDNFEMEFDLIGIQP 414
           + RV L EF V+N      P +Y   D+ WD              MD   +EFD++GI  
Sbjct: 11  RSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDA 70

Query: 415 AFANAFRKLMLSEVPSMAIEK 477
           A ANAFR+++L+EVP+MA+EK
Sbjct: 71  AIANAFRRILLAEVPTMAVEK 91


>AF008442-1|AAC14354.1|  346|Homo sapiens RNA polymerase I subunit
           hRPA39 protein.
          Length = 346

 Score = 64.9 bits (151), Expect = 2e-10
 Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
 Frame = +1

Query: 250 KPRVFLEEFRVKNA-----PEDYGLDDETWDXXXXXXXXXXXXXRMDNFEMEFDLIGIQP 414
           + RV L EF V+N      P +Y   D+ WD              MD   +EFD++GI  
Sbjct: 11  RSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDA 70

Query: 415 AFANAFRKLMLSEVPSMAIEK 477
           A ANAFR+++L+EVP+MA+EK
Sbjct: 71  AIANAFRRILLAEVPTMAVEK 91


>AL355802-10|CAI42627.1|   99|Homo sapiens RP3-337H4.4 protein.
          Length = 99

 Score = 52.8 bits (121), Expect = 9e-07
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
 Frame = +1

Query: 250 KPRVFLEEFRVKNA-----PEDYGLDDETWDXXXXXXXXXXXXXRMDNFEMEFDLIGIQP 414
           + RV L EF V+N      P +Y   D+ WD              MD   +EFD++GI  
Sbjct: 11  RSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDA 70

Query: 415 AFANAFRKLMLSEV 456
           A ANAFR+++L+EV
Sbjct: 71  AIANAFRRILLAEV 84


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,818,284
Number of Sequences: 237096
Number of extensions: 1377333
Number of successful extensions: 5262
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5262
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6354183230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)