Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_H19
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 226 2e-60
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 225 3e-60
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 28 1.0
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 27 1.8
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.1
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 26 4.1
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 4.1
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 7.1
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 9.4
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 25 9.4
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 9.4
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 226 bits (552), Expect = 2e-60
Identities = 104/141 (73%), Positives = 121/141 (85%)
Frame = +1
Query: 142 IFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLH 321
IFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYLVK GKD FH+R+R H
Sbjct: 33 IFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAH 92
Query: 322 PFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEAL 501
PFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D +A IEAL
Sbjct: 93 PFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKDSSRATAIEAL 152
Query: 502 RRAKFKFPGRQKIYVSKEVGF 564
RR ++KFPG+Q+I VSK+ GF
Sbjct: 153 RRCQYKFPGQQRIIVSKKWGF 173
Score = 64.9 bits (151), Expect = 1e-11
Identities = 27/37 (72%), Positives = 28/37 (75%)
Frame = +3
Query: 45 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIXYLRFG 155
M RRPARCYRYCKNKPYPKSR+ R VPD KI G
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLG 37
Score = 42.7 bits (96), Expect = 4e-05
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 524 PDVKRSTYQKKWGFTKYERDEFEKLREEGRLANDGCIVQY 643
P +R KKWGF++Y RDE+ + R G + DGC ++
Sbjct: 160 PGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKF 199
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 225 bits (551), Expect = 3e-60
Identities = 104/141 (73%), Positives = 121/141 (85%)
Frame = +1
Query: 142 IFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLH 321
IFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYLVK GKD FH+R+R H
Sbjct: 33 IFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAH 92
Query: 322 PFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEAL 501
PFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D +A IEAL
Sbjct: 93 PFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAIEAL 152
Query: 502 RRAKFKFPGRQKIYVSKEVGF 564
RR ++KFPG+Q+I VSK+ GF
Sbjct: 153 RRCQYKFPGQQRIIVSKKWGF 173
Score = 64.9 bits (151), Expect = 1e-11
Identities = 27/37 (72%), Positives = 28/37 (75%)
Frame = +3
Query: 45 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIXYLRFG 155
M RRPARCYRYCKNKPYPKSR+ R VPD KI G
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLG 37
Score = 42.7 bits (96), Expect = 4e-05
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 524 PDVKRSTYQKKWGFTKYERDEFEKLREEGRLANDGCIVQY 643
P +R KKWGF++Y RDE+ + R G + DGC ++
Sbjct: 160 PGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKF 199
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 28.3 bits (60), Expect = 1.0
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Frame = +1
Query: 316 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQPIMSVRSSDRWKA 483
L P R+ C G GK +G AR+ IG+ + + K
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158
Query: 484 QVIEALRRAKFKFPGRQKIYVSK 552
AL++A F PG+ +I V +
Sbjct: 159 LAEHALKQAAFHLPGKYEIIVKQ 181
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 27.5 bits (58), Expect = 1.8
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = -1
Query: 226 SAVHIRRTP---SARTVESRQRSLSSYPNRRYXILGSGTPRQNLDFGYGLFLQYR*HLAG 56
S VH TP SAR ES ++ L+ P+ S P + G F Q HLA
Sbjct: 898 SKVHTLETPKVISARPAESVKQPLTPVPSMTSQSAQSYIPPRRQQQQKGFFAQINDHLAQ 957
Query: 55 RRPMV 41
R M+
Sbjct: 958 RGNML 962
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 420 STLRLAKRTTHPSLEPISSSAR-*HFIDADNVERVKSHAD 304
+T +LAKR T PSL P S+ H I + ++ KS A+
Sbjct: 957 TTTKLAKRITQPSLSPARSTVTITHNIATEAKKKSKSAAN 996
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 246 CLQSL*AQLFIFVGHQVHAQWKVVNVRSLLTQ--IEDTGSWDQV 121
CL L L + H++ ++W+ +N R LL + E+TG D +
Sbjct: 940 CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETGEDDDL 983
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 4.1
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +1
Query: 148 DLGKKRANVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 291
++ KKRA DD + +VS EYE L SS+ ++ N KY+ KN K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 289 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 393
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Frame = -1
Query: 253 YVLPPKPLSSA---VHIRRTPSARTVESRQR---SLSSYPNRRYXILGSGTPRQN 107
Y++ +PL S VH+ R ++ + +LS+Y + +Y ++ +GTP QN
Sbjct: 977 YIIKDRPLLSRIKWVHMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILTGTPLQN 1031
>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +2
Query: 5 FFSEVVVSLCKDHHGAPASEMLPVLQK*TVSEIEVLSGC 121
+ S+ ++ K H G E++P + IE L GC
Sbjct: 145 YLSDFSIAWSKQHPGEEVQELIPQIGTGHYRAIETLFGC 183
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 157 KKRANVDDFPLCVHLVSDEYEQLSSEALEAG 249
+KRA +D LC+ +S + E ++ +LE+G
Sbjct: 64 EKRAALDTLRLCLKRISPDAELVAFGSLESG 94
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,907,025
Number of Sequences: 5004
Number of extensions: 63030
Number of successful extensions: 232
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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