Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_H14
         (339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu...    25   4.2  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    25   4.2  
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun...    25   4.2  
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    24   5.5  

>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
           Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 105 PEVRYHASFINLNSSANKQNTIKL 176
           PEV Y   F  L  S N  NTI +
Sbjct: 5   PEVDYSEKFAELQKSLNNLNTIDI 28


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 111 VRYHASFINLNSSANKQNTIKL 176
           V+YH +  N+ +S++  NTIKL
Sbjct: 140 VQYHPTAANVLASSSADNTIKL 161


>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
           Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 105 PEVRYHASFINLNSSANKQNTIKL 176
           PEV Y   F  L  S N  NTI +
Sbjct: 5   PEVDYSEKFAELQKSLNNLNTIDI 28


>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 22  VDKYLDWILLNSRF*SLDRKALE*THYAQKSDI 120
           +D+YL W+  N RF SL +   E T     S +
Sbjct: 72  IDRYLRWLGFNCRFYSLAKYIDERTREMTSSPV 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 815,206
Number of Sequences: 5004
Number of extensions: 12008
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)