Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_H10
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    27   1.8  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    27   2.4  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    27   3.1  
SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe...    26   4.1  
SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosa...    26   5.5  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    26   5.5  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   5.5  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    25   7.2  

>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -1

Query: 81  KT*KVYAFKISLIEKGIYNKHL 16
           KT +V +F  SL EKGI N+HL
Sbjct: 445 KTCQVISFLASLKEKGIQNRHL 466


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 226 EQQAEEIE-VLKSIYEGDDNFKQVDAKTYQYKYMDGDKSFI 345
           EQ  EE+E +  S+Y+ DDN + +D    ++  +   ++++
Sbjct: 79  EQSFEELEKITASLYQPDDNLQTLDLSLAEFSLIKDAQNYL 119


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 25/118 (21%), Positives = 45/118 (38%)
 Frame = +1

Query: 190  RRRRY*IMSDEAEQQAEEIEVLKSIYEGDDNFKQVDAKTYQYKYMDGDKSFILEISWGLK 369
            R +R+ + S+E       +   + +      FK+    +Y  K     K + L+      
Sbjct: 1001 RLKRFIMSSEEINLDIPNLSTKQFVLSS--GFKKSIEDSYTMKKRFWIKEYFLK-EVQAS 1057

Query: 370  YPTEKPSFNLEIFYNQHLLATVKENILSILNTEAEQWLGCAMTYTLFECLRERVSEIL 543
            + T+    + EI+   H+L+    N LSIL    + W+          C RE    +L
Sbjct: 1058 WKTDDNLHHGEIYLRNHILSDEMANNLSILPIRIQAWVSYDSEKVTTVCPREPFKLVL 1115


>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 233

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 268 EGDDNFKQVDAKTYQYKYMDGDKSFILEISWGLKYPTEKPSFNLEI 405
           E DD F Q+    Y+ K M   K  + +  +G  YP  KP +  E+
Sbjct: 60  EEDDEFLQM----YRNKRMQEWKDQMSKAKFGSVYPISKPEYTAEV 101


>SPAC31G5.18c |||ubiquitin family, human C1ORF55
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 187 NRRRRY*IMSDEAEQQAEEIEVLKSIYEGDD 279
           +RR +    S+EAE +  E +  KS+YE DD
Sbjct: 228 SRRMQASESSNEAEGEDSESQTSKSLYEWDD 258


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 197 EDIESCLMKPSSRRRKLKY*NRFTRAMIILNRWMLKLIS 313
           EDI++C  K  +++ K +  +    AM IL   ML L+S
Sbjct: 590 EDIDNCYSKVFNKKSKRESTSNEPTAMEILTEVMLSLLS 628


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = +1

Query: 226  EQQAEEIEVLKSIYEGDDNFKQVDAKTYQYKYMDGDKSFILEISWGLKYPTEKPS-FNLE 402
            +QQ EE+ VLK + E   N   ++ K     Y++ D   + ++   L+   +K   + L+
Sbjct: 1054 KQQKEELSVLKGVQELTIN--NLEEKV---NYLEADVKQLPKLKKELESLNDKDQLYQLQ 1108

Query: 403  IFYNQHLLATVKENILSILNTEAE 474
               N+ L A VKE + +I +   E
Sbjct: 1109 ATKNKELEAKVKECLNNIKSLTKE 1132


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 569 DTTSSTWPASISDTLSLRHSNSVYVMAQPSHCS 471
           D++SS+   S+SD L L   + V V  + S CS
Sbjct: 81  DSSSSSSTTSVSDMLQLDDRDKVIVSERNSMCS 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,120
Number of Sequences: 5004
Number of extensions: 51366
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)