Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_H10
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0893 - 25721576-25722205,25722366-25722443,25722628-25723560 31 1.1
07_01_0819 + 6606438-6607373,6608282-6608359,6608543-6609166 29 2.4
02_05_1062 - 33834305-33834694,33835190-33835333,33835466-338355... 29 2.4
10_02_0035 - 4429737-4429781,4430769-4430890,4431000-4431297,443... 29 3.2
02_01_0648 + 4828668-4829585,4829677-4830330 28 5.6
12_02_0233 - 16023062-16023253,16023528-16023609,16023699-160238... 28 7.5
11_03_0027 + 9078792-9079613 28 7.5
04_04_1129 - 31107892-31110246 28 7.5
01_06_1059 - 34156139-34156238,34157113-34157189,34158146-341582... 28 7.5
01_06_0900 - 32841880-32842078,32842179-32842300,32842621-328428... 28 7.5
>06_03_0893 - 25721576-25722205,25722366-25722443,25722628-25723560
Length = 546
Score = 30.7 bits (66), Expect = 1.1
Identities = 41/187 (21%), Positives = 69/187 (36%), Gaps = 5/187 (2%)
Frame = +1
Query: 70 FLRFMNKLLG*FFPISLLKLFPSFYFALWQMRKPREPKSNRRRRY*IMSDEAEQQAEEIE 249
+L + + L F +L L+PS A+W R PR +RR Y + E
Sbjct: 211 YLMLLERGLKLFARHTLPDLYPSSRLAMWLSRMPRRMMQHRREAYAFTDAIIREHQENRA 270
Query: 250 VLKSIYEGDDNFKQVDAKTYQYKYMDGDKSFILEISWGLKYPTEKPSFNLEIFYNQHLLA 429
+GDD +D + +GD F L + T + N
Sbjct: 271 AGAGDGDGDDKEDLLDVLLRIQR--EGDLQFPLSTE---RIKTTVGIIRVNNMLNNLSQT 325
Query: 430 TVKENILSILNTE----AEQWLGCAMTYTLFECLRE-RVSEILAGQVEEVVSTRGRKNRD 594
+N L+ + + G A+ + + E +R RV + +V + ++ R R D
Sbjct: 326 RHPKNYDITLSHDMFAGGSETAGTALQWIMAELIRNPRVMHKVQDEVRQTLAGRDRVTED 385
Query: 595 R*SDGNY 615
S+ NY
Sbjct: 386 AISNLNY 392
>07_01_0819 + 6606438-6607373,6608282-6608359,6608543-6609166
Length = 545
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +1
Query: 70 FLRFMNKLLG*FFPISLLKLFPSFYFALWQMRKPREPKSNRRRRY*IMSDEAEQQAEEIE 249
+L +N ++G F +S+ LFPS A PR R + ++ +++ ++IE
Sbjct: 207 YLAALNDMVGQTFSLSVADLFPSSKLASMVATAPRRALETRNKMERVIQQIIQERRDQIE 266
>02_05_1062 -
33834305-33834694,33835190-33835333,33835466-33835516,
33836098-33836262,33836566-33836670,33836729-33836869
Length = 331
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 408 LQSTLVSNSKRKHTINIEHRSGTMARLRHDVHAV*VPQGKGVRDTGWPGRGG 563
+QS L SN + +I+ +GT+ LRH+ +P G G ++ WP G
Sbjct: 94 IQSILSSNISESNFPDIKCPTGTIPILRHNSSEAHMPNG-GSQEEVWPSFSG 144
>10_02_0035 -
4429737-4429781,4430769-4430890,4431000-4431297,
4431644-4431682
Length = 167
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +3
Query: 471 GTMARLRHDVHAV*VPQGKGV--RDTGWPGRGGRVHQ 575
G AR D P+G GV R +GWPGR R Q
Sbjct: 49 GAAARGSSDRQGAAAPRGSGVEQRRSGWPGRQARGRQ 85
>02_01_0648 + 4828668-4829585,4829677-4830330
Length = 523
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = +1
Query: 70 FLRFMNKLLG*FFPISLLKLFPSFYFALWQMRKPREPKSNRRRRY*IMSDEAEQQAEEIE 249
FLR +++L +SL LFPS A+ R P RRR IM + E
Sbjct: 204 FLRMLDELFTIMPGMSLPDLFPSSRLAMLVSRAPGRIMRYRRRMRRIMDSIIHEHQERRA 263
Query: 250 VLKSIYEGDDN 282
+ + DD+
Sbjct: 264 AADAAGDDDDD 274
>12_02_0233 -
16023062-16023253,16023528-16023609,16023699-16023809,
16023890-16024141,16024227-16024580,16024893-16025548,
16025554-16026459,16026550-16026747
Length = 916
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +1
Query: 334 KSFILEISWGLKYPTEKPSFNLEIFYNQHL----LATVKENILSI 456
+ F+L+ SW + +P + PS+ Y + L A VKE+ S+
Sbjct: 368 RGFVLKESWKVGFPQDAPSYKKRDKYKEQLSDKIYAQVKEHFYSL 412
>11_03_0027 + 9078792-9079613
Length = 273
Score = 27.9 bits (59), Expect = 7.5
Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 7/126 (5%)
Frame = +1
Query: 190 RRRRY*IMSDEAEQQAEEIEVLKSIYEGDDNFK---QVDAKTYQYKYMDGDKSFILEISW 360
RRR Y S+ A+++ + ++++ + V + ++ D + FI + W
Sbjct: 116 RRRGYVFFSEVQFISADDLRAIDALWQEHSGGRFGYSVQRRLWEKSRRDFTRFFI-RVGW 174
Query: 361 GLKYPTEKPSFNLEIFYNQ---HLLATVKENILSILNT-EAEQWLGCAMTYTLFECLRER 528
K TE FN F ++ L E L + N Q LG T+ FE E+
Sbjct: 175 MKKLDTEVEQFNYRAFPDEFIWELNDDTPEGHLPLTNALRGTQLLGNIFTHPAFE--EEQ 232
Query: 529 VSEILA 546
E+ A
Sbjct: 233 EDELAA 238
>04_04_1129 - 31107892-31110246
Length = 784
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3
Query: 565 RPPRPGQPVSRTPFP 521
RPPRPG + RTP P
Sbjct: 161 RPPRPGHQLLRTPLP 175
>01_06_1059 -
34156139-34156238,34157113-34157189,34158146-34158259,
34158390-34158569,34159312-34159524
Length = 227
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +1
Query: 382 KPSFNLEIFYNQHLLATVKENIL----SILNTEAEQWLGCAMTYTLFE 513
+P +LEIF LL +KE++L +LN E ++ L YTL E
Sbjct: 122 EPKIHLEIFQEAELLINIKEHVLVPEHQVLNNEEKKTL--LERYTLKE 167
>01_06_0900 -
32841880-32842078,32842179-32842300,32842621-32842841,
32843086-32843224,32843350-32843576,32843677-32843788,
32843863-32844063,32845349-32845525
Length = 465
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 304 TYQYKYMDGDKSFILEISWGLKYPTEKP-SFNLEIFYNQHLLATVKENILS 453
+Y Y YM+G+ ++ W +KY + + ++ + H ++ V NI++
Sbjct: 321 SYNYHYMEGESMRVMYEPWFVKYKVDLVFAGHVHAYERTHRISNVAYNIVN 371
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,636,543
Number of Sequences: 37544
Number of extensions: 328539
Number of successful extensions: 992
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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