Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_H07
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    85   4e-18
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    85   4e-18
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    25   3.5  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   4.6  
SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase Bgl2|Schizosacch...    25   6.1  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 85.0 bits (201), Expect = 4e-18
 Identities = 37/47 (78%), Positives = 41/47 (87%)
 Frame = +1

Query: 88  VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRF 228
           VIVKFLTVM KHGYI EF  +DDHR+GKIV+ L GR+NKCGVISPRF
Sbjct: 33  VIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISPRF 79



 Score = 74.5 bits (175), Expect = 6e-15
 Identities = 35/52 (67%), Positives = 40/52 (76%), Gaps = 1/52 (1%)
 Frame = +2

Query: 227 FDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 379
           F+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR K  GGKILGFF+
Sbjct: 79  FNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130



 Score = 38.3 bits (85), Expect = 5e-04
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = +3

Query: 6  VLSDALKSIHNAEKRGKRQVLIRP 77
          VL+D L +I NAE+RG+RQVLIRP
Sbjct: 6  VLADCLNNIVNAERRGRRQVLIRP 29


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 85.0 bits (201), Expect = 4e-18
 Identities = 37/47 (78%), Positives = 41/47 (87%)
 Frame = +1

Query: 88  VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRF 228
           VIVKFLTVM KHGYI EF  +DDHR+GKIV+ L GR+NKCGVISPRF
Sbjct: 33  VIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISPRF 79



 Score = 74.5 bits (175), Expect = 6e-15
 Identities = 35/52 (67%), Positives = 40/52 (76%), Gaps = 1/52 (1%)
 Frame = +2

Query: 227 FDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 379
           F+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR K  GGKILGFF+
Sbjct: 79  FNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130



 Score = 38.3 bits (85), Expect = 5e-04
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = +3

Query: 6  VLSDALKSIHNAEKRGKRQVLIRP 77
          VL+D L +I NAE+RG+RQVLIRP
Sbjct: 6  VLADCLNNIVNAERRGRRQVLIRP 29


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 273 PHDSLVT*SLQQVVASWTMKKPEENTLEEK 362
           P+ S +T SL Q +  W +++PE     EK
Sbjct: 154 PNQSFLTASLDQKIFHWVIEEPESMLDAEK 183


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 284 FGYLVLTTSGGIMDHEEARRKHLGGKIL 367
           FGY+V+TT+    +   A  K LG ++L
Sbjct: 798 FGYVVMTTNQDAENALSAAGKQLGNRVL 825


>SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase
           Bgl2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 321

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 194 D*TSVVSFHLXFDVPINDIERWTNLLPSRQFGYLVLTTSGGIMDHE 331
           D   +V   L FDVP+   + W NL      G +V+T S  IM ++
Sbjct: 159 DVRGLVQQKLGFDVPVGTADSW-NLWAGGS-GDVVITASDFIMSND 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,526,634
Number of Sequences: 5004
Number of extensions: 27067
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)