Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_H07
(411 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823 90 6e-19
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419... 90 6e-19
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289 60 7e-10
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 38 0.003
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177... 27 5.8
07_01_0802 - 6287180-6287605 27 7.7
>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
Length = 130
Score = 90.2 bits (214), Expect = 6e-19
Identities = 40/47 (85%), Positives = 42/47 (89%)
Frame = +1
Query: 88 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRF 228
VI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRF
Sbjct: 33 VIIKFLIVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISPRF 79
Score = 88.2 bits (209), Expect = 2e-18
Identities = 39/52 (75%), Positives = 46/52 (88%), Gaps = 1/52 (1%)
Frame = +2
Query: 227 FDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 379
FDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 79 FDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
Score = 45.2 bits (102), Expect = 2e-05
Identities = 20/24 (83%), Positives = 24/24 (100%)
Frame = +3
Query: 6 VLSDALKSIHNAEKRGKRQVLIRP 77
VL+DALK+++NAEKRGKRQVLIRP
Sbjct: 6 VLNDALKTMYNAEKRGKRQVLIRP 29
>02_03_0219 +
16541350-16541482,16541605-16541765,16541863-16541940,
16543176-16543445
Length = 213
Score = 90.2 bits (214), Expect = 6e-19
Identities = 40/47 (85%), Positives = 42/47 (89%)
Frame = +1
Query: 88 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRF 228
VI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRF
Sbjct: 33 VIIKFLIVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISPRF 79
Score = 77.4 bits (182), Expect = 4e-15
Identities = 36/48 (75%), Positives = 41/48 (85%), Gaps = 1/48 (2%)
Frame = +2
Query: 227 FDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 367
FDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK++GGK L
Sbjct: 79 FDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKEL 126
Score = 44.4 bits (100), Expect = 4e-05
Identities = 19/24 (79%), Positives = 24/24 (100%)
Frame = +3
Query: 6 VLSDALKSIHNAEKRGKRQVLIRP 77
VL+DALK+++NAEKRGKRQV+IRP
Sbjct: 6 VLNDALKTMYNAEKRGKRQVMIRP 29
>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
Length = 129
Score = 60.1 bits (139), Expect = 7e-10
Identities = 23/50 (46%), Positives = 41/50 (82%), Gaps = 1/50 (2%)
Frame = +2
Query: 230 DVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFF 376
D+ +IE++ +LP+RQ+GY+V+TT G++DHEEA ++++GG++LG+F
Sbjct: 79 DIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQVLGYF 128
Score = 51.6 bits (118), Expect = 2e-07
Identities = 22/46 (47%), Positives = 30/46 (65%)
Frame = +1
Query: 88 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPR 225
V+V FL +M GYI +FE++D HR GKI V L GR+ C ++ R
Sbjct: 32 VMVSFLNIMKHRGYIKKFEVIDPHRVGKINVELHGRIKDCKALTYR 77
Score = 31.5 bits (68), Expect = 0.27
Identities = 12/24 (50%), Positives = 20/24 (83%)
Frame = +3
Query: 6 VLSDALKSIHNAEKRGKRQVLIRP 77
+L+DAL+++ NAE+RGK L++P
Sbjct: 5 ILNDALRTMVNAERRGKATALLQP 28
>01_01_0365 -
2859617-2859722,2860047-2860489,2862232-2862391,
2863431-2863516,2863648-2866272
Length = 1139
Score = 37.9 bits (84), Expect = 0.003
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +1
Query: 148 VDDHRAGKIVVNLTGRLNKCGVISPR 225
VDDH++G+I++ GRLNK GVIS R
Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVISFR 937
>03_01_0224 -
1771582-1771727,1771855-1771980,1772489-1772517,
1772689-1772747,1772816-1772929,1773030-1773238,
1773347-1774087,1775678-1776238,1776295-1776419,
1778187-1778317,1779020-1779178,1779471-1779728,
1780140-1780164,1780531-1780592,1780944-1781003,
1781112-1781219,1781703-1781838,1781880-1781929,
1782024-1782096,1782209-1782345,1782441-1782527,
1782624-1782721,1783259-1783369,1783685-1783769,
1783880-1783969
Length = 1259
Score = 27.1 bits (57), Expect = 5.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 233 HQXRGEMTPHLFSLPVRFTTILPAL*SSTISNSP 132
H RG P + P + PA+ ++T SNSP
Sbjct: 794 HMVRGAAPPPASTAPPAANNVTPAINATTASNSP 827
>07_01_0802 - 6287180-6287605
Length = 141
Score = 26.6 bits (56), Expect = 7.7
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = +3
Query: 159 QSWQDCCKSHRQTKQVWC 212
Q WQDCC+ WC
Sbjct: 51 QVWQDCCRQLAAVDDGWC 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,748,500
Number of Sequences: 37544
Number of extensions: 175442
Number of successful extensions: 300
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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