Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_H07
         (411 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal pro...    93   7e-20
AF039710-6|AAB96688.1|  392|Caenorhabditis elegans Hypothetical ...    29   1.7  
Z81506-10|CAB04123.2|  270|Caenorhabditis elegans Hypothetical p...    28   3.0  
AL023836-2|CAC42371.1|  270|Caenorhabditis elegans Hypothetical ...    28   3.0  
Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical pr...    27   4.0  
AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical...    27   7.0  
AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical...    27   7.0  
AL021481-5|CAA16336.2|  455|Caenorhabditis elegans Hypothetical ...    26   9.2  

>AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 22 protein.
          Length = 130

 Score = 93.1 bits (221), Expect = 7e-20
 Identities = 45/60 (75%), Positives = 53/60 (88%), Gaps = 1/60 (1%)
 Frame = +2

Query: 203 SVVSFHLXFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 379
           SV+S  L  ++ +ND+E++TN LLPSRQFGYL+LTTS GIMDHEEARRKHLGGKILGFFF
Sbjct: 73  SVISPRL--NIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKHLGGKILGFFF 130



 Score = 92.7 bits (220), Expect = 9e-20
 Identities = 43/46 (93%), Positives = 44/46 (95%)
 Frame = +1

Query: 88  VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPR 225
           VIV+FLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNK  VISPR
Sbjct: 33  VIVRFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKASVISPR 78



 Score = 44.0 bits (99), Expect = 4e-05
 Identities = 20/24 (83%), Positives = 23/24 (95%)
 Frame = +3

Query: 6  VLSDALKSIHNAEKRGKRQVLIRP 77
          VL+DAL +I+NAEKRGKRQVLIRP
Sbjct: 6  VLADALNAINNAEKRGKRQVLIRP 29


>AF039710-6|AAB96688.1|  392|Caenorhabditis elegans Hypothetical
           protein C46E10.3 protein.
          Length = 392

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 233 HQXRGEMTPHLFSLPVRFTTILPAL*SSTISNSPM 129
           H  +G+     + LP RF+T+L AL   T+ NS M
Sbjct: 318 HPSKGDCPQDSYDLP-RFSTVLKALYGCTVGNSDM 351


>Z81506-10|CAB04123.2|  270|Caenorhabditis elegans Hypothetical
           protein F16H6.10 protein.
          Length = 270

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 264 LVHLSISLMGTSKXR*NDTTLV*SACEIYNNLASSVIINDFKLS 133
           L HLSI++   S     D T +     I +   SS+I+NDF L+
Sbjct: 88  LSHLSITISEESSLNKTDVTFLKHLKRILDLRPSSLIVNDFTLT 131


>AL023836-2|CAC42371.1|  270|Caenorhabditis elegans Hypothetical
           protein F16H6.10 protein.
          Length = 270

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 264 LVHLSISLMGTSKXR*NDTTLV*SACEIYNNLASSVIINDFKLS 133
           L HLSI++   S     D T +     I +   SS+I+NDF L+
Sbjct: 88  LSHLSITISEESSLNKTDVTFLKHLKRILDLRPSSLIVNDFTLT 131


>Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical
           protein F17B5.6 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
 Frame = +1

Query: 277 TTVWL-PSPYNKWW 315
           T +WL P PYN WW
Sbjct: 29  TVIWLIPRPYNYWW 42


>AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12b protein.
          Length = 504

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 352 KVFSSGFFMVHDATTCCK 299
           KVFS+GFFM  D  + C+
Sbjct: 140 KVFSNGFFMTFDKLSSCQ 157


>AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12a protein.
          Length = 507

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 352 KVFSSGFFMVHDATTCCK 299
           KVFS+GFFM  D  + C+
Sbjct: 140 KVFSNGFFMTFDKLSSCQ 157


>AL021481-5|CAA16336.2|  455|Caenorhabditis elegans Hypothetical
           protein Y43F4B.7 protein.
          Length = 455

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 206 VVSFHLXFDVPINDIERW-TNLLP-SRQFGYLVLTTSGGIM 322
           ++S+ L F VP+  IE+W T  +P  +Q  Y+ +    G++
Sbjct: 334 MISYPLQFYVPMERIEKWITRKIPVDKQTLYIYIARYSGVI 374


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,411,094
Number of Sequences: 27780
Number of extensions: 150083
Number of successful extensions: 277
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)