Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_H01
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    27   1.8  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    27   2.3  
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    27   3.1  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    26   4.1  
SPCC338.10c |cox5||cytochrome c oxidase subunit V|Schizosaccharo...    26   5.4  
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|...    25   7.2  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   7.2  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   9.5  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   9.5  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.5  

>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 562 FKICKITRPVLSLKESQNHRSPCTY 488
           F  C  T+P LS+ + Q H S C++
Sbjct: 420 FICCYCTKPFLSISKLQEHESSCSH 444


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 399 TELLSNICNFFSESNRFTDSFYNNL 325
           +ELL+N+ NF + + +FT + YN L
Sbjct: 602 SELLANLGNFVNRTLKFTTAKYNGL 626


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
 Frame = +1

Query: 466 LEAILINYKYMAIY-----DFGSLLAIRLVL*FC 552
           L  I+I+Y    I+     +FG LLA RLVL FC
Sbjct: 127 LAFIVISYSLTTIFTGFCHNFGGLLAARLVLGFC 160


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +3

Query: 390 KVRFLVMIKMAS*RFFVFCFSIVMKFRSDSY 482
           +++FL + K  S +FF+F  S+ +K  +DS+
Sbjct: 753 QLQFLTLAKRKSCKFFLFGLSLPLKSPNDSH 783


>SPCC338.10c |cox5||cytochrome c oxidase subunit
           V|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 174

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 510 FWLSFSDKTGLVILHILKKVLFWCTMK--RIQLYFFSLI 620
           +W++F +       HI +K +FW T+    I +  F LI
Sbjct: 78  YWIAFGEHGPRAFSHISQKTVFWGTVAGLTIGVVLFGLI 116


>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 338 NESVKRFDSEKKLQMFDKSSVSGYDQNG 421
           N  VK  D E  +  +DKS   GY   G
Sbjct: 103 NAFVKGSDEEVSIPFYDKSKFGGYGDRG 130


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 393 LLSNICNFFSESNRFTD-SFYNNLKCCVT 310
           +   +CNF +E  RF D +FY++   C T
Sbjct: 336 IFEGVCNFSAEITRFADRNFYDDWWNCWT 364


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +3

Query: 525  SDKTGLVILHILKKVL 572
            +DKTGL +LH ++K++
Sbjct: 1113 NDKTGLTLLHTIEKIV 1128


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -1

Query: 372 FFSESNRFTDSFYNNLK--CCVTVISCLV 292
           F +  +R +DSFY NL+    +T ++C+V
Sbjct: 146 FSTPRSRLSDSFYKNLRYYLLLTFLTCVV 174


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 642 FNKSLIMILKKKNTVEYASLYTKIILF 562
           + ++LI IL KK   E+A  + KII F
Sbjct: 563 WTRTLISILSKKMGTEFAIRFLKIISF 589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,813
Number of Sequences: 5004
Number of extensions: 51603
Number of successful extensions: 118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)