Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_H01
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   1.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.9  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   5.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   5.9  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    22   5.9  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 366 SESNRFTDSFYNNLKCC 316
           SES  F D    NL+CC
Sbjct: 130 SESKDFIDFIQKNLQCC 146


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 245 YVKNLPVYIHTCGV 286
           YVK++ VY+ TC V
Sbjct: 279 YVKSIDVYLGTCFV 292


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 245 YVKNLPVYIHTCGV 286
           YVK++ VY+ TC V
Sbjct: 279 YVKSIDVYLGTCFV 292


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -2

Query: 122 KVIILVL*HQMKHNFALVVSGVVKIIF*YL---QEFLMQF 12
           +  + VL H   H++  +VSG + ++F +    QE L  F
Sbjct: 125 RTFLRVLLHLAMHDYPPLVSGALHLLFRHFSQRQEVLQAF 164


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 245 YVKNLPVYIHTCGV 286
           YVK++ VY+ TC V
Sbjct: 218 YVKSIDVYLGTCFV 231


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -2

Query: 122 KVIILVL*HQMKHNFALVVSGVVKIIF*YL---QEFLMQF 12
           +  + VL H   H++  +VSG + ++F +    QE L  F
Sbjct: 93  RTFLRVLLHLAMHDYPPLVSGALHLLFRHFSQRQEVLQAF 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,193
Number of Sequences: 438
Number of extensions: 3770
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)