Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_G12
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch...    29   0.73 
SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    28   0.97 
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   1.7  
SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2 |Schizosacch...    27   2.2  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    27   2.2  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    27   3.0  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    27   3.0  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    27   3.0  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    26   3.9  
SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosa...    26   3.9  
SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyce...    26   5.2  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    26   5.2  
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept...    25   6.8  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    25   6.8  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.0  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   9.0  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    25   9.0  

>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 355 PEIPTPTEKKKVPMNKVQVGNAPSPNLKAVKSKIGSLDNATYKPG 489
           P++P P+EK +  + ++          KA +S +  +D ATYKPG
Sbjct: 156 PQVPVPSEKNQKVLRQIAD--------KAFESNMHIIDMATYKPG 192


>SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 178

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = +1

Query: 553 AKNEAYTPSGGAKKIVTNKLEWNAKS 630
           AK E+  PS G KK  T KLE  AKS
Sbjct: 70  AKKESEKPSDGEKKGKTEKLEKEAKS 95


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +1

Query: 109 KFTXKMAEVNDGVAVEKH-VEKHNTEGDNDSGVDESTQGNDLNGSPSSPNKK 261
           K +    E N   A  K  +   +TE  N +  + ST+    N + S+PNKK
Sbjct: 564 KTSKAQQEANSTTAEGKEKLSGDSTETGNSTNKEASTEDTKANATASAPNKK 615


>SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 213

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 321 SIIEQECNSQNSRNSYPDRKEKSTDE*SSSWECTVAKFKSREI 449
           SII + C   +  + +P  K+    +  +  EC  +K KS+EI
Sbjct: 61  SIINKFCTQCSDNDEFPTPKQIMETDVETLHECGFSKLKSQEI 103


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 351 NSRNSYPDRKEKSTDE*SSSWECTVAKFKSR 443
           + RN Y D+K  S+ E +SS+E  +A++ S+
Sbjct: 39  SERNGYGDKKGSSSKEKTSSFEDELAEYASQ 69


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 154 EKHVEKHNTEGDNDSGVDESTQGNDLNGSPSSPNKKIVNKTP 279
           +KH E    +GD+DS  +   +G DL     +P K   +K+P
Sbjct: 275 KKHHEDEGYDGDSDSSNESEVEGIDLFEEDPNPLKN-KSKSP 315


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 421 PSPNLKAVKSKIGSLDNATYKPGGGKVKIENRKLEFGNITP 543
           P   L A K K+G L +  Y+  G   KIE +  E   I P
Sbjct: 489 PEDVLSAYKDKVGDLASRGYRSLGVARKIEGQHWEIMGIMP 529


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 231 EIISLC-RFVNSAVVISLCVMFFHVLLDSNSVVDFGHF 121
           EI+ L  +  N ++++  CV  FH+  ++   +D  HF
Sbjct: 207 EILELIEKSKNPSILVDACVSRFHIQQETQDFIDATHF 244


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 103 HIKFTXKMAEVNDGVAVEKHVEKHNTEGDNDSGV 204
           H++   K  + N G   + H+E  N E + D+ V
Sbjct: 15  HVESIVKFEDSNRGTITDFHIETANNEEEKDANV 48


>SPAC31G5.18c |||ubiquitin family, human C1ORF55
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 299 TVLGRAFLDHRARVQQPKLQ 358
           TVL RA+L H++R+  P +Q
Sbjct: 41  TVLERAYLTHQSRIVHPDIQ 60


>SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 131 KSTTELLSRSTWKNITQREITTAELTNLHKEMISMDL 241
           K +T     S W+++  R  T   +  + KE+ SMD+
Sbjct: 107 KGSTRFCMGSAWRDLNGRNRTFKNILEIIKEVRSMDM 143


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +1

Query: 355 PEIPTPTEKKKVPMNKVQVGNAPSPNLKAVKSKIGSL 465
           P     T ++KV M  VQVG+  S + +A KSK GS+
Sbjct: 774 PRCTQLTTQEKVDM-WVQVGDVKSASEEAAKSKSGSV 809


>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 361 FLEFWLLHSCSMIEKGSP*DCYSIFLLLAFC 269
           F E+  +H+C  ++K S  +  S+FLL  FC
Sbjct: 186 FFEWKTIHACPTVKKDSTLNPVSVFLL--FC 214


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 249 SEQENRKQNANKRKIE*QS*GEPFSIIEQECNSQNSRNSYPDRKEKSTDE*SSS 410
           S++  +KQ  +K+K E  S  E  S   +  +S +   S     E S+ E SSS
Sbjct: 67  SKKSVKKQKKSKKKEESSSESESESSSSESESSSSESESSSSESESSSSESSSS 120


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
 Frame = +1

Query: 115 TXKMAEVNDGVAVEKHVEKHNTEGDNDSGVDESTQGNDLNGSPSSPN--KKIVNKTPTKE 288
           T   + VN G  +  +    N+E  N  G   +  G D + S  S N  K     T T E
Sbjct: 16  TIPASNVNSGDFISSNTSSSNSENSNIQGKHYTQVGEDADNSFISENTPKNTFESTQTYE 75


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +1

Query: 64   HDKALSSTKFQVGHIKFTXKMAEVNDGVAVEKHVEKHNTEGDNDSGVDESTQGNDLN 234
            H+   S    Q G++    +++  N      +   + N    ND+  DE T+G D N
Sbjct: 1465 HESQKSDRWRQNGNVNRNPRVSNNNSTNVSRERSSEANHRTSNDNKRDEVTEGKDKN 1521


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 112 FTXKMAEV-NDGVAVEKHVEKHNTEGDNDSGVDESTQGNDL 231
           FT  ++ +  + V VE  ++  NT  +N + VD++  G D+
Sbjct: 25  FTTFVSRIYGNSVDVEDQIKAFNTLRENAADVDDTVAGKDI 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.128    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,746
Number of Sequences: 5004
Number of extensions: 49827
Number of successful extensions: 146
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)