Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_G04
         (607 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X75339-1|CAA53089.1|  177|Drosophila melanogaster ribosomal prot...   229   3e-60
AY071222-1|AAL48844.1|  177|Drosophila melanogaster RE26382p pro...   229   3e-60
AE013599-2503|AAF57838.1|  177|Drosophila melanogaster CG6510-PA...   229   3e-60

>X75339-1|CAA53089.1|  177|Drosophila melanogaster ribosomal protein
           L18a protein.
          Length = 177

 Score =  229 bits (559), Expect = 3e-60
 Identities = 113/177 (63%), Positives = 129/177 (72%)
 Frame = +2

Query: 26  MKAKGQLREYEVIXPQAPFGERAQASLXIK*EFSLRNPIVAKSRFWYFLRQLKKFKKTTG 205
           M+AKG L+EYEV+  + P  +  Q  L     F+  N IVAKSRFWYFLRQLKKFKKTTG
Sbjct: 1   MRAKGLLKEYEVVGRKLPSEKEPQTPLYKMRIFAPDN-IVAKSRFWYFLRQLKKFKKTTG 59

Query: 206 EIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRA 385
           EIV              NFGIWLRY+SRSG HNMYREYRDL+VGGAVTQCYRDMGARHRA
Sbjct: 60  EIVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRA 119

Query: 386 RAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 556
           RAHSIQIIKV+ I AA  RR  VKQFH+S I+FPL +RVHH      F++++P TYF
Sbjct: 120 RAHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176


>AY071222-1|AAL48844.1|  177|Drosophila melanogaster RE26382p
           protein.
          Length = 177

 Score =  229 bits (559), Expect = 3e-60
 Identities = 113/177 (63%), Positives = 129/177 (72%)
 Frame = +2

Query: 26  MKAKGQLREYEVIXPQAPFGERAQASLXIK*EFSLRNPIVAKSRFWYFLRQLKKFKKTTG 205
           M+AKG L+EYEV+  + P  +  Q  L     F+  N IVAKSRFWYFLRQLKKFKKTTG
Sbjct: 1   MRAKGLLKEYEVVGRKLPSEKEPQTPLYKMRIFAPDN-IVAKSRFWYFLRQLKKFKKTTG 59

Query: 206 EIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRA 385
           EIV              NFGIWLRY+SRSG HNMYREYRDL+VGGAVTQCYRDMGARHRA
Sbjct: 60  EIVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRA 119

Query: 386 RAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 556
           RAHSIQIIKV+ I AA  RR  VKQFH+S I+FPL +RVHH      F++++P TYF
Sbjct: 120 RAHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176


>AE013599-2503|AAF57838.1|  177|Drosophila melanogaster CG6510-PA
           protein.
          Length = 177

 Score =  229 bits (559), Expect = 3e-60
 Identities = 113/177 (63%), Positives = 129/177 (72%)
 Frame = +2

Query: 26  MKAKGQLREYEVIXPQAPFGERAQASLXIK*EFSLRNPIVAKSRFWYFLRQLKKFKKTTG 205
           M+AKG L+EYEV+  + P  +  Q  L     F+  N IVAKSRFWYFLRQLKKFKKTTG
Sbjct: 1   MRAKGLLKEYEVVGRKLPSEKEPQTPLYKMRIFAPDN-IVAKSRFWYFLRQLKKFKKTTG 59

Query: 206 EIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRA 385
           EIV              NFGIWLRY+SRSG HNMYREYRDL+VGGAVTQCYRDMGARHRA
Sbjct: 60  EIVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRA 119

Query: 386 RAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 556
           RAHSIQIIKV+ I AA  RR  VKQFH+S I+FPL +RVHH      F++++P TYF
Sbjct: 120 RAHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,457,456
Number of Sequences: 53049
Number of extensions: 543267
Number of successful extensions: 1733
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1727
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2482967880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)