Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_G01
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   5.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.8  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 144 PDKSWQPPVVVIETTMG 194
           PDK W+P +V+     G
Sbjct: 105 PDKVWKPDIVLFNNADG 121


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -1

Query: 445  GPALAIDNIPAPACFKSD 392
            G A      P PACF SD
Sbjct: 1044 GAAAMASAAPMPACFDSD 1061


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
 Frame = -1

Query: 562 NPILLT---TVIPFCTLPKIVCL 503
           N  LLT   T+IP CT   + CL
Sbjct: 301 NKALLTPGVTMIPACTCKAVACL 323


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +1

Query: 196 KLCWKCIGNM 225
           KLC +C+GN+
Sbjct: 543 KLCQQCVGNL 552


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +1

Query: 196 KLCWKCIGNM 225
           KLC +C+GN+
Sbjct: 543 KLCQQCVGNL 552


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +1

Query: 196 KLCWKCIGNM 225
           KLC +C+GN+
Sbjct: 543 KLCQQCVGNL 552


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -1

Query: 487 VGANVIKNCDAFVLGPALAIDNI 419
           +GA+++ +CD    G  +++D I
Sbjct: 167 IGAHILDDCDNDTYGLEMSVDFI 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,680
Number of Sequences: 438
Number of extensions: 4288
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)