Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_F18
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0444 + 3357048-3357425,3357841-3357969,3358165-3358284,335... 52 3e-08
03_05_0654 + 26479416-26479605,26480058-26480246,26480674-264809... 36 0.028
11_02_0055 - 7819391-7820098,7820202-7820534,7820930-7821103 30 1.8
04_03_0435 + 15902356-15902574,15902680-15902777,15905100-159051... 29 4.2
01_06_1571 - 38314952-38315089,38315958-38315987,38316107-383162... 29 4.2
06_03_0181 + 17618888-17619125,17621503-17621683,17621765-176219... 28 5.6
02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,369... 28 5.6
12_01_0486 + 3854889-3855014,3855897-3856089,3856206-3856310,385... 27 9.7
11_01_0518 + 4057428-4057538,4059609-4059801,4059921-4060025,406... 27 9.7
06_03_0458 - 20995834-20996004,20996404-20997309,20997778-209979... 27 9.7
>07_01_0444 +
3357048-3357425,3357841-3357969,3358165-3358284,
3358661-3358753,3358935-3359014,3359180-3359293,
3359530-3359603,3359757-3359833,3360558-3360641,
3360732-3360824,3360901-3361008,3361130-3361204,
3361507-3361911
Length = 609
Score = 52.0 bits (119), Expect(2) = 3e-08
Identities = 20/29 (68%), Positives = 26/29 (89%)
Frame = +2
Query: 563 QVMDPRTKMILFKLLNRGIINEINGCIST 649
+ +DPRT+M+LFK+LNRG+ N INGCIST
Sbjct: 209 KAIDPRTRMVLFKMLNRGVFNTINGCIST 237
Score = 23.4 bits (48), Expect(2) = 3e-08
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 464 MSNNTEKFIDQNDRKKDNERIRIKDKHDRATAEQV 568
MSN+ I + R+ + R +K DRAT EQ+
Sbjct: 136 MSNSVTTAIRDSIRETAIGKTRNTEKADRATVEQL 170
>03_05_0654 +
26479416-26479605,26480058-26480246,26480674-26480989,
26481286-26481844
Length = 417
Score = 35.9 bits (79), Expect = 0.028
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Frame = +2
Query: 311 YFLDSDDPTQGTKKKDNFNSQ---APTTKLTSYQPTEKLFKRYINKINVDKY------EP 463
Y+ DS + T K+K N ++ P LT+ QPT LF + + +K+ E
Sbjct: 225 YWTDSLNRTMANKEKGNKAAEENNGPLLNLTNQQPTLSLFSQLKQQNKPEKFNTAGDSES 284
Query: 464 MSNNTEKFIDQNDRKKDNERIRIKDKHDRATAEQVM 571
+S+NT ++ +++N+ I HDR + V+
Sbjct: 285 ISSNTMLKPWESSNQQNNKSIPFTKMHDRGCLQSVL 320
>11_02_0055 - 7819391-7820098,7820202-7820534,7820930-7821103
Length = 404
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +2
Query: 410 EKLFKRYINKINVDKYEPMSNNTEKFIDQNDRKKDNERIRIKDKHDRATAEQVMDPRTKM 589
EK + Y+ KIN +KY+ +++N ++ D K IR K D + +++ +
Sbjct: 277 EKKWSTYLKKINKEKYKSITSNPTHVVNVEDAPK-LRPIRHKKAKDERSGKRLASEAISV 335
Query: 590 ILFKL 604
I KL
Sbjct: 336 IDQKL 340
>04_03_0435 +
15902356-15902574,15902680-15902777,15905100-15905163,
15906707-15907045
Length = 239
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 332 PTQGTKKKDNFNSQ--APTTKLTSYQPTEKLFKRYINKINVDKYEPMSNNT 478
P GT K +NFN A + KLT + E + Y + ++ D+Y M NT
Sbjct: 175 PIPGTTKIENFNQNVAALSVKLTPAEMAE--LESYASNVHGDRYPLMMANT 223
>01_06_1571 -
38314952-38315089,38315958-38315987,38316107-38316206,
38316322-38316383,38316465-38316531,38316889-38317076
Length = 194
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +2
Query: 386 KLTSYQPTEKLFKRYINKINVDKYEPMSNNTEKFIDQN-DR-KKDNERIRIKDKHDRATA 559
KL Y + R + K + + + + K + DR KK+N+ ++I+ +H +
Sbjct: 53 KLYDYCSPKTSLSRILEKYQTNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGED 112
Query: 560 EQVMDPRTKMILFKLLNRGIIN 625
+ P+ +++ + L+ GI+N
Sbjct: 113 LNSLQPKELIMIEEALDNGIVN 134
>06_03_0181 +
17618888-17619125,17621503-17621683,17621765-17621906,
17622002-17622071,17622162-17622307,17623382-17623948,
17624558-17624641,17624723-17624797,17625049-17625217,
17625395-17625586,17625662-17626053
Length = 751
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 353 KDNFNSQAPTTKLTSY-QPTEKLFKRYINKINVDKYEPMSNNTEKFIDQNDRKKDNERIR 529
K++ + P + Y +++F N++ DK M N ++ + ++KKD+E R
Sbjct: 476 KNHAELKKPKNGMPKYLDELDRMFMGVHNELQKDKVAAMDN----YLGRREKKKDDEMAR 531
Query: 530 IKDKHDR 550
+++ +R
Sbjct: 532 VREVAER 538
>02_01_0509 +
3694689-3695683,3695799-3695946,3696864-3696943,
3697214-3698062,3698193-3698337,3698426-3698677,
3698780-3699089,3699415-3699524
Length = 962
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +2
Query: 533 KDKHDRATAEQVMDPRTKMILFKLLNRG---IINEINGCIS 646
KDK R E++++ R K + LLN G + ++ CIS
Sbjct: 817 KDKSARVEEEKIVEERLKKLALMLLNSGNKKFLTALSNCIS 857
>12_01_0486 +
3854889-3855014,3855897-3856089,3856206-3856310,
3856541-3856629,3856720-3856872,3857047-3857181,
3857293-3857459,3858193-3858287,3858495-3858868,
3859101-3859374,3859464-3859531
Length = 592
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -1
Query: 463 GFIFVHIYFVYVSFKEFFCWLIGSEFCCWSLAVEVIFFLCTLCRVI 326
G IF+ +YFV+ SF + + + + L V VI + T+C I
Sbjct: 462 GSIFIEMYFVFTSFWNYKVYYVYG----FMLLVFVILLIVTICVTI 503
>11_01_0518 +
4057428-4057538,4059609-4059801,4059921-4060025,
4060259-4060347,4060424-4060576,4060754-4060888,
4061241-4061407,4062129-4062223,4062367-4062740,
4062903-4063176,4063806-4063822
Length = 570
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -1
Query: 463 GFIFVHIYFVYVSFKEFFCWLIGSEFCCWSLAVEVIFFLCTLCRVI 326
G IF+ +YFV+ SF + + + + L V VI + T+C I
Sbjct: 457 GSIFIEMYFVFTSFWNYKVYYVYG----FMLLVFVILIIVTICVTI 498
>06_03_0458 -
20995834-20996004,20996404-20997309,20997778-20997942,
20998024-20998353,20998471-20998527,20998579-20998692,
20999220-20999381,20999465-20999527,21001100-21001207,
21001598-21001675,21001771-21001902
Length = 761
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 450 TNMNPCQTTLRSLSIRMIEKKIMSEL 527
+NM C TT ++S++ + +K++SEL
Sbjct: 634 SNMKNCTTTTVAVSLKRVAEKVVSEL 659
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,771,320
Number of Sequences: 37544
Number of extensions: 198448
Number of successful extensions: 477
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -