Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_F15
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   7.7  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 134 KLRIFLS*AYVYHAVLFIFSFSLIVTLVTVGKLSYYQ 244
           KLR ++S    Y +VL I +FS+   L     L +Y+
Sbjct: 108 KLRAYVSETSSYVSVLTIVAFSIERYLAIYHPLRHYR 144


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 571 LHISYVVELSLIALKFNN*CSLN 639
           LH   +VE ++ AL  N+ CSL+
Sbjct: 149 LHTLEIVESNVQALPVNSLCSLD 171


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 316 ILYIKFPFILIEYLKEEKTY 257
           +LY + P+++ E   EEK Y
Sbjct: 81  VLYQQSPYLMYENPDEEKRY 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,750
Number of Sequences: 438
Number of extensions: 2371
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)