Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_F10
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    27   2.3  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    27   3.1  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    25   9.5  
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    25   9.5  

>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +2

Query: 437 ANIFALLILYNQMRVQPKDFNFFFIMNT 520
           +N+F+L    + +  +P D N ++++NT
Sbjct: 62  SNVFSLFSNVDDINFEPSDSNMYYVLNT 89


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 218 FNTFCLEKSYISMLDK 265
           FN  C+EK+Y  +LDK
Sbjct: 317 FNEICIEKNYTDLLDK 332


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -2

Query: 159 FLDSVKVYLNLYG 121
           +LDS+K +LNLYG
Sbjct: 562 YLDSLKFFLNLYG 574


>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 538 DLEIALSIHNKKKVKILRLYSHLII*NKQRKYVGK 434
           DL+ +LS  N  K +ILR+Y H  + N+  +  G+
Sbjct: 67  DLQDSLS-RNSHKTRILRMYIHSTVANQSWQQKGE 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,409,653
Number of Sequences: 5004
Number of extensions: 45163
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)