Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_F08
(470 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc... 146 1e-36
SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc... 145 3e-36
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi... 28 0.83
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha... 27 1.4
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 27 1.9
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce... 26 3.3
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy... 26 3.3
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 26 3.3
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 25 7.7
>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
L30|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 146 bits (354), Expect = 1e-36
Identities = 66/98 (67%), Positives = 78/98 (79%)
Frame = +3
Query: 81 KRPSSQLTPALPLVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYALLA 260
K+ + L L MKSGKY LGYK TLKTLR GKAKL++IA NAPPLRKSE+EYYA+L+
Sbjct: 18 KKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLRKSELEYYAMLS 77
Query: 261 KTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 374
+ VHHYSGNNI+LGTACGK +RV LA+ D GDSDI+
Sbjct: 78 RCSVHHYSGNNIDLGTACGKLFRVGVLAVIDAGDSDIL 115
Score = 31.5 bits (68), Expect = 0.067
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +2
Query: 47 TAPKMVAAKKQKKTIESINSRLAFGDEIGKILLRIQANFENSSTRQSK 190
TAP +KK KK+ ++INS+LA + GK +L ++ + + ++K
Sbjct: 7 TAPVAAVSKKGKKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGKAK 54
>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
L30|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 145 bits (352), Expect = 3e-36
Identities = 66/101 (65%), Positives = 78/101 (77%)
Frame = +3
Query: 72 RNRKRPSSQLTPALPLVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYA 251
+ K+ + L L MKSGKY LGYK TLKTLR GKAKL++IA N PPLRKSE+EYYA
Sbjct: 7 KKSKKSGDTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPLRKSELEYYA 66
Query: 252 LLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 374
+L+K VHHY+G NI+LGTACGK +RV LAITD GDSDI+
Sbjct: 67 MLSKANVHHYAGTNIDLGTACGKLFRVGVLAITDAGDSDIL 107
>SPAC977.14c |||aldo/keto reductase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 27.9 bits (59), Expect = 0.83
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 183 KAKLVIIAKNAPPLRKSEIEYYALLAKTGVHHYSGNNIELGTACG 317
++ +VI++K P+RK I+ + L+ GVH ++ EL CG
Sbjct: 87 RSSIVILSKCFFPVRKDLIKIFGDLSSRGVHFL--DSPELANQCG 129
>SPAC1834.01 |sup45||translation release factor
eRF1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 433
Score = 27.1 bits (57), Expect = 1.4
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 123 MKSGKYCLGYKQTLKTLRQGKAKLVI 200
+ SGKYC G T+ L++G + ++
Sbjct: 293 LDSGKYCFGVVDTMNALQEGAVETLL 318
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 26.6 bits (56), Expect = 1.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 71 KKQKKTIESINSRLAFGDEIGKILLRIQANFENSSTRQSKAG 196
KK++ ES+N LA E+ + I+A F + +++AG
Sbjct: 605 KKEENVSESLNEWLAIASELIDEFVSIKAFFPSEKKARARAG 646
>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 25.8 bits (54), Expect = 3.3
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -2
Query: 169 VFKVCLYPKQYFPDFITKGKAGVN 98
+ C+YPK+Y D + + +A +N
Sbjct: 154 LLSACVYPKEYEHDLLLQSQARIN 177
>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 25.8 bits (54), Expect = 3.3
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -3
Query: 150 ILSNIFPISSPKARRELIDSMVFFCFFAATILGAVNANDPHQEHKW 13
+LS +F +SPKA + L+ V A + ++N+ H+W
Sbjct: 116 LLSRVFCRTSPKAAKVLLTRCVREAEEYAKVAEIYHSNNQSNPHRW 161
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 25.8 bits (54), Expect = 3.3
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +3
Query: 81 KRPSSQLTPALPLVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 224
K+ + ++ + K G K+ +K +R+G+ LVI+A + P+
Sbjct: 35 KKLNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPM 82
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 24.6 bits (51), Expect = 7.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 51 LPKWLQQRNRKRPSSQLTPALPLVMKSGKY 140
L +WL N K PS+Q + L L K ++
Sbjct: 133 LIEWLNPMNLKEPSNQESDTLSLTEKFSRF 162
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,755,985
Number of Sequences: 5004
Number of extensions: 32773
Number of successful extensions: 94
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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