Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_F07
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    30   0.33 
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    28   1.3  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    26   5.4  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   5.4  
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.2  
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    25   7.2  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    25   9.5  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    25   9.5  

>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +2

Query: 125 PSQHLKACQDMVDIPTKSKVTLDCIPARDRMECLNYVQQRQADFVPVD 268
           P   L+A Q+++D    S++    I   + ++   YVQ+++ DF PVD
Sbjct: 230 PGNKLEAIQNVIDSLHISRIE---IRTENSIDISQYVQKKEVDFFPVD 274


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 249 PISFQLTPKTCTWPPKYPIRTSSFSRSTEPMKN 347
           P+  Q  P+   +PP YPI   S+   T P  N
Sbjct: 736 PVVSQQQPQPYAFPPMYPIPYVSYGYGTMPYNN 768


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 249 PISFQLTPKTCTWPPKYPIRTSSFSRSTEPMKNRMRLSVTKQ 374
           P  + LT  TC      PI+++   ++ E + N  ++S   Q
Sbjct: 266 PSGYPLTSSTCVSSISQPIQSTDCQKAQENLSNNKQMSSNDQ 307


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 288 PPKYPIRTSSFSRSTEPMKN 347
           PPK P+R  S  RS+ P++N
Sbjct: 306 PPKPPLRKVSTQRSSSPIEN 325


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = -1

Query: 600 HLPTMQDFVKN---VDKAFSSFSFGEMLWSFIFGKTARFISIVRGILYPTFLLTPV 442
           HL ++  +V N    D++FSS S  +       G T         +  PTFL +PV
Sbjct: 127 HLKSVSSYVSNSSGADRSFSSNSSSDTNSILYAGPTFTHSPAASNLPIPTFLHSPV 182


>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +3

Query: 126 HHNT*KRVRTWWIFRPNPRSH*TAFPPEIEWSV*ITFSRGKPISFQLTPKTCTWPPKYPI 305
           HH T      WWI+  +PR +    PP     +  T  R   I FQ+ P   T+  +  I
Sbjct: 479 HHKT-----AWWIYVVDPRQNRVIVPPFSITDIPKTL-RTFRIPFQVPPVAGTFSFQLHI 532

Query: 306 RTSSF 320
            ++S+
Sbjct: 533 MSNSY 537


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 379 NYCFVTERRIRFFIGSVLLENDEVL 305
           NYCF  +R+I   +G +   N +++
Sbjct: 225 NYCFTQKRKITPRLGQITKSNSQIM 249


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -1

Query: 594 PTMQDFVKNVDKAFSSFSFGE---MLWSFIFGKTARFISI 484
           PT+Q F+  + KAF    FG    +L+  I GK A  + +
Sbjct: 273 PTVQQFMNLLKKAFFDHLFGRHCLLLFQVIAGKCALSVKL 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,904,820
Number of Sequences: 5004
Number of extensions: 63103
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)