Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_F06
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...    66   3e-12
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    26   3.9  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    26   3.9  
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    25   9.0  

>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score = 66.1 bits (154), Expect = 3e-12
 Identities = 40/91 (43%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
 Frame = +1

Query: 10  GEIRELAGCDLLTISPKLLQELASSXXXXXXXXXXXXXXXNDIEKIS-LT-ESEFRWHLN 183
           GEI+ELAG D LTISP LL++L +S                ++EK+S LT E +FR+  N
Sbjct: 230 GEIKELAGVDFLTISPALLEQLNNSTDAVPKKLDASKASSLNLEKVSYLTDEPKFRFDFN 289

Query: 184 EDHMATDKLSDGIRRFAADTRKLESLIKTLL 276
            D MA  KLS GI  FA D   L +++K  L
Sbjct: 290 NDEMAVVKLSTGIAAFAKDADTLRTILKAKL 320


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +1

Query: 160 SEFRWHLNEDHMATDKLSDGIRRFAADTRKLESLIKTLL 276
           S+F+W  N ++  +  + D  R    + RK++ +IK ++
Sbjct: 190 SKFKWDSNNNNDWSSLMKDCFRDVVNNNRKMKEIIKDVM 228


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 155 VSDIFSMSFKAANFGSRTFFSG-LSLLAN 72
           +SDI S S K AN  S+  FSG L+  AN
Sbjct: 173 LSDISSSSMKKANNSSKPLFSGKLTFKAN 201


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 294 IRLLISKKRFDERFQLPSISSKSSYTI*EFVSSHV 190
           I +L     +D R  +PS  SK    I E + +HV
Sbjct: 120 IAMLCCSLGYDSRIYMPSDQSKEKSDILELLGAHV 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,855,275
Number of Sequences: 5004
Number of extensions: 32906
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)