Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_F06
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0074 + 15760667-15761815                                         32   0.32 
04_01_0112 + 1151242-1151272,1151722-1151928,1151996-1152318,115...    29   2.3  
09_06_0114 - 20942068-20942241,20942454-20942524,20942642-209426...    27   6.9  

>01_04_0074 + 15760667-15761815
          Length = 382

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 344 HVGIYLMYENLIFSSTTFIWIKFLGFYGFVILLIWDHVVDHSFFCIR 484
           H G++++ E  IFSS  F WI    F   ++++   HV+ H    +R
Sbjct: 171 HSGVFVITEVEIFSSEDFTWIADDAFETEIMMISMPHVLLHGVLYLR 217


>04_01_0112 +
           1151242-1151272,1151722-1151928,1151996-1152318,
           1152552-1153793
          Length = 600

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 335 IHFHVGIYLMYE-NLIFSSTTFIWIKFLGFYGFVILLIWDHV 457
           +H + G++   + +L+F S  F     LGF+G V LLIWD V
Sbjct: 538 LHQNQGVFDAIDTSLVFWSYVFGCFA-LGFWGTVALLIWDEV 578


>09_06_0114 -
           20942068-20942241,20942454-20942524,20942642-20942660,
           20944009-20944362
          Length = 205

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 303 SKVIRLLISKKRFDERFQLPSISSKSSYTI*EFVSSHV 190
           S+ IR +I  K  D    LP++S+K    + E+ S HV
Sbjct: 31  SQTIRHMIEDKCADTGIPLPNVSAKILSKVIEYCSKHV 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,687,753
Number of Sequences: 37544
Number of extensions: 167380
Number of successful extensions: 315
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)