Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_F04
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 31 0.19
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi... 30 0.33
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 29 0.77
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 27 1.8
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 27 3.1
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 24 3.9
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 26 5.4
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 26 5.4
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 7.2
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc... 25 7.2
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 9.5
SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyce... 25 9.5
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma... 25 9.5
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 30.7 bits (66), Expect = 0.19
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -2
Query: 307 IHTANFINNHYSFYVKLPNDYKEIFK-NETYCKNKVQKETYEYLSSQYNS 161
IH ++ I Y+ V LP +I +E YC N ++K+ Y L+ Q+NS
Sbjct: 141 IHNSSRILGQYTLQV-LPEGTAKINPLHENYCLNSLRKDQYVDLAIQFNS 189
>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
Hat1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 29.9 bits (64), Expect = 0.33
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -2
Query: 364 TLQKLVQESSEVLHGNLFNIHTANFINNHYSF 269
TL +++ S + GN F++H+AN I+N YSF
Sbjct: 88 TLNTYLKDRSIKVEGNSFDVHSANSIHN-YSF 118
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 28.7 bits (61), Expect = 0.77
Identities = 18/71 (25%), Positives = 28/71 (39%)
Frame = -2
Query: 274 SFYVKLPNDYKEIFKNETYCKNKVQKETYEYLSSQYNSDEFLKSKSKLNLEIGDSKIVVE 95
S Y+ P DY + YC N +KE SS + S+ + I + V+
Sbjct: 491 SAYLVNPYDYSRFAETINYCLNMTEKERERRFSSLWKQATSQSSQQWIYKLINRAAYEVK 550
Query: 94 VVNDGFSEPLL 62
+ + PLL
Sbjct: 551 ALESHMTTPLL 561
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 589 KVREYLKTVKYLIPLKSKLNRVNVNIKLVVKLPGVHDKRDCV 464
++ ++ K V+ LIP +LNR N+ + +V+ +D D V
Sbjct: 97 RLAQFAKEVRLLIPNSYRLNRGNIVVGSLVEAARANDITDIV 138
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 181 LSSQYNSDEFLKSKSKLNLEIGDSKIVVEVVND 83
L++ DEF K+ S +NLE+ + E +ND
Sbjct: 1230 LATTPKEDEFNKTLSTINLEVANKLTSSEYIND 1262
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 23.8 bits (49), Expect(2) = 3.9
Identities = 7/19 (36%), Positives = 16/19 (84%)
Frame = -2
Query: 604 KTVTIKVREYLKTVKYLIP 548
KT+ +KV++++ ++K +IP
Sbjct: 510 KTIKVKVKDFVMSMKRMIP 528
Score = 20.6 bits (41), Expect(2) = 3.9
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -2
Query: 571 KTVKYLIPLKSKLN 530
KT++ L+P+ SKLN
Sbjct: 558 KTLQKLMPVASKLN 571
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.8 bits (54), Expect = 5.4
Identities = 7/29 (24%), Positives = 17/29 (58%)
Frame = +2
Query: 434 QNILCIQNCINTIPFVMDSW*LHYQFDIN 520
+ +C+ +C+ + SW L Y++D++
Sbjct: 664 KKFICLGDCVKEVSLNATSWMLFYRWDVH 692
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -2
Query: 406 HKDSRTICLKQPNKTLQKLVQESSEVLHGNLFNIHTANFINNH 278
H D++ + L K Q ++++ + LH N+F+ H + H
Sbjct: 376 HMDAQHLLLLITQKHAQLILEQIRKELHPNIFSEHVGGGLKIH 418
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +3
Query: 306 ILKRFPCKTSDDSCTNFCNVLFGCFKH 386
IL+ PC + C CN L C H
Sbjct: 685 ILENQPCYRENVRCGELCNKLLSCKTH 711
>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 273
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -2
Query: 295 NFINNHYSFYVKLPNDYKEIF-KNETYCKNKVQKETYEYLSSQYNSDEFLKSKSK 134
NF+ N +S K+ DY+ ++ K +CK+ + E S + N++ +K SK
Sbjct: 204 NFLGNLWSLMPKI-LDYQHLYSKPCDFCKSLISPVYLELPSVRRNANSTVKPTSK 257
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 385 CLKQPNKTLQKLVQE 341
CL PN TLQ LV+E
Sbjct: 583 CLLNPNMTLQNLVEE 597
>SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 218
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -2
Query: 304 HTANFINNHYSFYVKLPNDYKEIFKNETYCKNKVQKETYEYLSSQYNSDE 155
+T NFI N SFY I C+++ +++ +Y+ S++NS+E
Sbjct: 152 YTFNFITNSKSFY--------RIGLGIGRCESRNREDVSDYVLSKFNSNE 193
>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 434
Score = 25.0 bits (52), Expect = 9.5
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = -2
Query: 250 DYKEIFKNETYCKNKVQKETYEYLSSQYNSDEFLKSKSKLNLEIGDSKIVVEVVNDGFSE 71
D+KE K + K YE+ ++ Y L++ K L++G S VE G +
Sbjct: 251 DFKEDLKLKLNAKYHQSALRYEHTNNAYMLITALRAYLKFLLKVGISN--VERYLQGLGK 308
Query: 70 PLLK-ISGGNMS-IGY 29
L+K + N+S IGY
Sbjct: 309 DLIKELESLNVSVIGY 324
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,434
Number of Sequences: 5004
Number of extensions: 48581
Number of successful extensions: 166
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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