Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_F04
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   0.63 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   1.9  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.6  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   3.4  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              22   4.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   7.8  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -2

Query: 340 SSEVLHGNLFNIHTANFINNHYSFYVKLPNDYKEIFKN 227
           S++ +H N  N +  N+ NN+ ++     N+YK+++ N
Sbjct: 319 SNKTIHNNN-NYNNNNYNNNYNNYNNNNYNNYKKLYYN 355


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -2

Query: 319 NLFNIHTANFINNHYSFYVKLPNDYKEIFKNETYCKNKVQK 197
           N +     N  NN+Y+ Y    N+Y   +K   Y  N +++
Sbjct: 320 NNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNINYIEQ 360


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 239 FFVIIG*FYIERIMIVYKISSVD 307
           FF+    F+++R++ VY+ S+ D
Sbjct: 269 FFICWAPFHVQRLLYVYEDSTYD 291


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -2

Query: 418 FIKIHKDSRTICLKQPNKTL---QKLVQESSE 332
           ++ +  D  T+CLKQ N  L     L+++ SE
Sbjct: 16  YMMVRCDDITLCLKQENLNLDDIDSLLEDESE 47


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 411 LIKCSAVNKTFFVYKTV 461
           LIK S + + FF YKT+
Sbjct: 113 LIKISKILECFFKYKTI 129


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 78  KPSFTTSTTILESPISRF 131
           +PS TTSTTI +  I  F
Sbjct: 389 EPSTTTSTTISQKHIKVF 406


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,823
Number of Sequences: 438
Number of extensions: 3183
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)