Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_F02
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    26   2.0  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    26   2.0  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    25   3.4  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    25   6.0  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   6.0  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    24   7.9  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    24   7.9  

>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query: 46  LGSLMFMFFVTAVGNLETILFGKAFQLKLPEVVL-SMGISLIAAGMVHRICFTTCLIF 216
           L  L F  F   V  + ++L G    + LP ++L ++ I  +AA +     FTTCLI+
Sbjct: 131 LTGLCFATFSYEVSPVVSVLSG-VLLISLPTLILLNLCILKLAAKLHLSALFTTCLIY 187


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 128 FNWNALPNRIVSRLPTAVTK 69
           FNW++L + ++ R+P A TK
Sbjct: 11  FNWSSLSSILLPRIPLATTK 30


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 114 SIPIEITRSSTIDGNIIDCCWHGPQDLFHHMPHFLRDNHLL 236
           S+PI  + S T    I+  C HG       +PH+++   ++
Sbjct: 113 SLPIVGSISETSVSGIMSTCTHGSSLQHQVLPHYIKSMRIM 153


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 158 IPIDSTTSGNFNWNALPN 105
           +P D++T+ +F WN L N
Sbjct: 331 LPADASTARSFGWNVLIN 348


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 21/80 (26%), Positives = 37/80 (46%)
 Frame = +1

Query: 82  VGNLETILFGKAFQLKLPEVVLSMGISLIAAGMVHRICFTTCLIFCVITIYYMNKLSQKK 261
           +GN++   FGKAF +++P  ++S G        ++ I   T L    +T  Y+ +LS  +
Sbjct: 724 LGNVKDSCFGKAFNVEIP--IISRGFLEAIPVKINSIGKRT-LGNLTLTCLYIPELSVPE 780

Query: 262 YAVVAPQPAAVKSRRHK*NN 321
             +      A    RH  +N
Sbjct: 781 QELPFTLEQATMDLRHVRSN 800


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 117 IPIEITRSSTIDGNIIDCCWHGP 185
           + +  T    ID NI D C H P
Sbjct: 114 VEVVCTNQKIIDENITDMCQHSP 136


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 180 GPQDLFHHMPHFLRDNHL 233
           G Q + H+  HF+  NHL
Sbjct: 217 GKQHIIHYERHFMHKNHL 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,489,152
Number of Sequences: 5004
Number of extensions: 28852
Number of successful extensions: 86
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)