Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_F02
         (408 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0275 - 23762905-23762995,23763775-23763841,23763925-237639...    58   4e-09
12_02_1088 - 25954506-25954652,25954769-25954918,25955011-259551...    27   4.3  

>05_05_0275 -
           23762905-23762995,23763775-23763841,23763925-23763976,
           23764966-23765124
          Length = 122

 Score = 57.6 bits (133), Expect = 4e-09
 Identities = 29/79 (36%), Positives = 46/79 (58%)
 Frame = +1

Query: 16  SPMTIIFGGYLGSLMFMFFVTAVGNLETILFGKAFQLKLPEVVLSMGISLIAAGMVHRIC 195
           S +  I GG++ SL+F+F +T +GN +        +     VV++   +LI AG VHR+C
Sbjct: 33  SELMTIAGGFVSSLLFLFLLTFIGNYQE---ANGVKTGWGAVVVAELTALIVAGTVHRVC 89

Query: 196 FTTCLIFCVITIYYMNKLS 252
            TTC +F    +Y ++KLS
Sbjct: 90  ITTCFLFSAGFLYEVDKLS 108


>12_02_1088 -
           25954506-25954652,25954769-25954918,25955011-25955116,
           25955247-25955569,25955656-25955790,25956310-25956444,
           25956445-25956525,25956619-25956807,25956935-25957127,
           25957244-25957350,25957457-25957531,25957619-25957774,
           25957968-25958051,25958152-25958265,25958345-25958440,
           25958543-25958633,25958721-25958836,25958934-25959093,
           25960390-25960634
          Length = 900

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 9   ILVSYDYNIRRLSWFINVHVLCNCCW 86
           +L+S D  + ++ W I V+ L  CCW
Sbjct: 559 VLLSRDMYLLQVLWTIRVNYLFLCCW 584


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,150,976
Number of Sequences: 37544
Number of extensions: 171781
Number of successful extensions: 400
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)