Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_E24
(373 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 140 2e-34
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 133 5e-32
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 78 3e-15
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 32 0.17
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 27 3.6
03_02_0173 + 6138406-6138628,6139769-6139857,6139922-6140608,614... 27 4.7
02_05_0890 - 32546918-32547088,32547224-32547334,32547705-325478... 27 4.7
06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660... 27 6.2
06_01_0280 - 2056449-2056487,2056613-2056930,2057025-2057171,205... 27 6.2
09_04_0146 - 15080906-15081322,15081556-15081697,15081804-150818... 26 8.2
03_01_0061 + 490037-490045,490121-490302,490551-490671,491933-49... 26 8.2
02_02_0241 - 8204430-8205398 26 8.2
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 140 bits (340), Expect = 2e-34
Identities = 60/94 (63%), Positives = 76/94 (80%)
Frame = +1
Query: 1 LYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKL 180
+YKRG+ KL+ QRIP+ +N ++E+ L KH+IIC+EDL+HEI TVG FK A+NFLWPFKL
Sbjct: 151 IYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIEDLVHEIMTVGPHFKEANNFLWPFKL 210
Query: 181 NNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 282
P GG +KK HYV+GGD GNRED IN+L+RRM
Sbjct: 211 KAPLGGLKKKRNHYVEGGDAGNREDYINELIRRM 244
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 133 bits (321), Expect = 5e-32
Identities = 60/100 (60%), Positives = 77/100 (77%), Gaps = 6/100 (6%)
Frame = +1
Query: 1 LYKRGFAKLSGQRIPITSNSIVEKR------LHKHNIICVEDLIHEIFTVGEKFKYASNF 162
+YKRG+ KL+ QRIP+T+N ++E+ L KH+IIC+EDL+HEI TVG FK A+NF
Sbjct: 150 IYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICIEDLVHEIMTVGPHFKEANNF 209
Query: 163 LWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 282
LWPFKL P GG +KK HYV+GGD GNRE+ IN+L+RRM
Sbjct: 210 LWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRM 249
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 77.8 bits (183), Expect = 3e-15
Identities = 36/79 (45%), Positives = 51/79 (64%)
Frame = +1
Query: 1 LYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKL 180
+YK+G L + P+TSN ++EK L ++ IIC+EDL+HEI +VG F+ ASNFL PFKL
Sbjct: 153 IYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLEDLVHEIASVGPHFREASNFLMPFKL 212
Query: 181 NNPTGGWRKKTIHYVDGGD 237
P + K + DG +
Sbjct: 213 KCPERRLQMKKKPFKDGAE 231
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 31.9 bits (69), Expect = 0.17
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = -2
Query: 258 LVFAVTKVSPVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVFM 79
+V A +++ + + L+ + W+ G ++LEL N+E + D+VL + + M
Sbjct: 1112 IVSASSRILDGECTSSALSYSLGWLSPPSGSVIAAQLLELGKNNEIVTDQVLRQELALVM 1171
Query: 78 E---PLLNNAVGSD 46
LL+N +GSD
Sbjct: 1172 PKIYSLLSNLIGSD 1185
>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
Length = 1037
Score = 27.5 bits (58), Expect = 3.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 61 IVEKRLHKHNIICVEDLIHEI 123
I K LH+H I VEDL+H +
Sbjct: 106 INHKHLHRHYSIGVEDLVHHV 126
>03_02_0173 +
6138406-6138628,6139769-6139857,6139922-6140608,
6140682-6140834,6140922-6141290
Length = 506
Score = 27.1 bits (57), Expect = 4.7
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 155 LAYLNFSPTVKISWMRSSTQIMLCL 81
L++ +F PTV++ +RS T + LCL
Sbjct: 192 LSHCSFRPTVEVVSLRSLTSLDLCL 216
>02_05_0890 -
32546918-32547088,32547224-32547334,32547705-32547884,
32547960-32548064,32548333-32548431,32548524-32548679,
32548772-32548850,32549213-32549278,32549382-32549536,
32549675-32550034,32550150-32550305,32550779-32550856,
32551471-32551812
Length = 685
Score = 27.1 bits (57), Expect = 4.7
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -3
Query: 206 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 72
LR P + GH+K ++Y+ F T +++ +ST L LW +
Sbjct: 545 LRNPSAPVHVFGGHKKAVSYVKFLSTNELA--SASTDSTLRLWDV 587
>06_03_0785 - 24563310-24565004,24565302-24565384,24565484-24566039,
24566397-24566513,24566565-24567131,24568632-24568702,
24569833-24569903,24570270-24570441,24571229-24572212,
24573128-24574808
Length = 1998
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -2
Query: 189 WIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVFMEPLL 67
W++ EG Q + + EL + D ++ V + DN+ ++ LL
Sbjct: 1822 WLMSLEGSQSLVSLKELRLENCDNLESVPDMDNMPSLQILL 1862
>06_01_0280 -
2056449-2056487,2056613-2056930,2057025-2057171,
2057273-2058112,2059044-2059117,2059515-2059647,
2059804-2059941
Length = 562
Score = 26.6 bits (56), Expect = 6.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 155 LAYLNFSPTVKISWMRSSTQIMLC 84
L+ +F PTV +S +RS T++ LC
Sbjct: 254 LSNCSFHPTVTLSGLRSLTRLYLC 277
>09_04_0146 -
15080906-15081322,15081556-15081697,15081804-15081887,
15081982-15082039,15084038-15084572
Length = 411
Score = 26.2 bits (55), Expect = 8.2
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +1
Query: 19 AKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGG 198
AKLS ++I + S L +H + + + E+ V E+F N+ W F + P G
Sbjct: 238 AKLSERKI-LGPCSPARSLLSEHRLRIIIENAQEVLKVIEEFGSFDNYCWGFLNSKPMVG 296
>03_01_0061 +
490037-490045,490121-490302,490551-490671,491933-492106,
492246-492409,492506-492593,492687-492740,492837-492917,
493075-493083
Length = 293
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 70 KRLHKHNIICVEDLIHEIFTVGEKFKY 150
K +H NI+ + D+IH +G F+Y
Sbjct: 55 KEMHHRNIVRLHDVIHSEKRIGLVFEY 81
>02_02_0241 - 8204430-8205398
Length = 322
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -3
Query: 206 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLW 78
+R P L L GH + + FSP + M S + +C+W
Sbjct: 227 VRAPRAPLAQLAGHGYAVKRVKFSPHRQGMLMSCSYDMTVCMW 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,095,204
Number of Sequences: 37544
Number of extensions: 177372
Number of successful extensions: 464
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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