Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_E13
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    27   3.1  
SPAC23A1.03 |apt1||adenine phosphoribosyltransferase |Schizosacc...    27   3.1  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    26   4.1  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   4.1  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   4.1  
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.5  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    26   5.5  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   7.2  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    25   7.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   7.2  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   9.5  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   9.5  

>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 368 YTIDHSK--CKQYFKISQCEYTLGRYAHIK 451
           Y++DH+   CKQY  + +  Y LGR  + K
Sbjct: 642 YSLDHAAQICKQYNYLDELVYILGRMGNNK 671


>SPAC23A1.03 |apt1||adenine phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = -2

Query: 340 PGTILVITISEKLHVNSDGLRKGSLSYARKTLTVELFLIT-KASVNSSELKSPNAAIIPS 164
           PG ++V++ +++   +S  ++KG++   ++ L V+  L T   ++ + EL +     +  
Sbjct: 92  PGDLVVVSYNKEYSTDSFAIQKGTIKPGQRVLIVDDILATGGTALAADELVTRLGGELVG 151

Query: 163 EYFPNELLVISLTKELV 113
             F  EL  +   K L+
Sbjct: 152 HLFLLELTFLQGRKRLM 168


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
            Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -2

Query: 640  ISLYNFSSPIGSSLGLLRDWSKIQNTRLPSTLIPNKSKIMSRL*SMTNGC 491
            I L N+ + +G    + RD+ +I+N+     ++  K K + R  S T GC
Sbjct: 1037 IVLGNYVALVGYGSEIFRDFYQIRNSDEMDRILRRKRKNLQRKRSGTIGC 1086


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 189  DFNSDELTDAFVIKNSSTVNVFLAYDKEPFLRPSEF 296
            DF   +L  AF++   +    FLAY  + FL+   F
Sbjct: 1141 DFMQSQLIPAFLVTTDTKAQGFLAYALQEFLKLGGF 1176


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 174 IAAFGDFNSDELTDAFVIKNSSTVNVFLAYDKEPFLRPSEFTCN 305
           + +F  F+S      F  +N+   N+F   +  P LR S   CN
Sbjct: 20  VPSFPPFHSSVANIHFTKENNLKSNIFEHNNNSPTLRSSSVACN 63


>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 616 PIGSSLGLLRDWSKIQNTR 560
           P GS   LLRDW KI+  R
Sbjct: 261 PHGSFFELLRDWKKIEEFR 279


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +3

Query: 186 GDFNSDELTDAFVIKNSSTVNVFLAYDKEPFLRPSEFTCNFSDIV 320
           G F+    T   V   S +V     Y ++PF+R      NFS IV
Sbjct: 30  GSFSKKSSTSQLVRTGSPSVEPTALYLQQPFVRTHLVKGNFSTIV 74


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 252 FLAYDKEPFLRPSEFTCNFSDIVITS 329
           FLAYD+ P L   E   +F D+   S
Sbjct: 338 FLAYDRSPSLTNQEAESSFQDVASIS 363


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 238 ELFLITKASVNSSELKSPNAAIIPSEYFPNELLVIS-LTKELVDKITLNNK 89
           E F+  K    S + +     +   +YF ++ L+ S L++ELVDKI L  K
Sbjct: 394 EFFVKEKNGSESHDHQGQGDVVWKGKYFLDKELIPSFLSEELVDKIFLIGK 444


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = -2

Query: 622  SSPIGSSLGLLRDWS---KIQNTRLPSTLIPNKSKI 524
            SS + SS+G+   +S   K+ + ++PST+ P+ S I
Sbjct: 3657 SSSLSSSIGVGSSFSSNSKVTSNKVPSTVSPHSSSI 3692


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 624  FHLPLVLLWVCYVTGQKSKTL 562
            FH  L  LWVC + G + + L
Sbjct: 1256 FHAELYKLWVCLLEGLRQRNL 1276


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
 Frame = -2

Query: 268 LSYARKTLTVELFLITKASVNSSELKSPNAAIIPSEYFPNELLVIS--------LTKELV 113
           LS   KTL   L L      N +  K  +  +      P+E+ ++         LT    
Sbjct: 451 LSEDSKTLVRNLVLALSLCHNVTPSKGHDGVVSYQAASPDEVAIVKWTSTLGLVLTNRTR 510

Query: 112 DKITLNNKIKIVYTIF 65
           D ITLNN +  +  IF
Sbjct: 511 DAITLNNNVYKILNIF 526


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,743,442
Number of Sequences: 5004
Number of extensions: 57645
Number of successful extensions: 161
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)