Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP14_F_E12
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 30 0.25
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 28 1.0
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 26 4.1
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 25 7.2
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc... 25 9.5
SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr 1... 25 9.5
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom... 25 9.5
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 30.3 bits (65), Expect = 0.25
Identities = 20/80 (25%), Positives = 36/80 (45%)
Frame = +3
Query: 207 SGASTTKGQMSDESQPTDNHASFGGTFEVSDSSGEDTSIVEQKYDSEDAKSEHHRRPTKI 386
S +S++ ES DN +S + S+SS ED+ + S D++SE +
Sbjct: 162 SDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDS---DSSSSSSDSESESSSEGSDS 218
Query: 387 PLNFRTWETVGKKTDSDESN 446
+ + E+ D+D S+
Sbjct: 219 SSSSSSSESESSSEDNDSSS 238
Score = 29.9 bits (64), Expect = 0.34
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 207 SGASTTKGQMSDESQPTDNHASFGGTFEVSDSSGEDTSIVEQKYDSEDAKS 359
S +S++ ES DN +S + S+SS ED+ DSE S
Sbjct: 216 SDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESS 266
Score = 28.3 bits (60), Expect = 1.0
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +3
Query: 207 SGASTTKGQMSD---ESQPTDNHASFGGTFEVSDSSGEDTSIVEQKYDSEDAKSEHHRRP 377
SG+S+ + S ES DN +S + S+SS ED+ + S D++SE
Sbjct: 105 SGSSSDESDSSSSESESSSEDNDSSSSSSDSESESSSEDS---DSSSSSSDSESESSSEG 161
Query: 378 TKIPLNFRTWETVGKKTDSDESN 446
+ + + E+ D+D S+
Sbjct: 162 SDSSSSSSSSESESSSEDNDSSS 184
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +3
Query: 207 SGASTTKGQMSDESQPTDNHASFGGTFEVSDSSGEDTSIVEQKYDSEDAKS 359
S +S+ S S +++ +S + S+SS ED+ DS+ + S
Sbjct: 263 SESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSS 313
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 219 TTKGQMSDESQPTDNHASFGGTFEVSDSSGEDTSIVEQ 332
+T G +S S +SF GT +S SS E+T+ Q
Sbjct: 523 STSGSVSSFSSSPSPTSSFSGTSALSSSSNEETTTTTQ 560
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +3
Query: 288 EVSDS-SGEDTSIVEQKYDSEDAKSE-HHRRPTK 383
EV D SGED +E+K EDAK + RP+K
Sbjct: 982 EVEDEESGEDWDELERKARQEDAKHDAFEERPSK 1015
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -3
Query: 157 RPVCKHVALAKH*GKHDFFLLKYANFLTCAPQYVLSVTIFN 35
+P K V G D FL+KY + + Y L+ T+F+
Sbjct: 66 KPSYKQVNWIDSQGLKDTFLVKYGDLINIQDPYNLNKTLFS 106
>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 553
Score = 25.0 bits (52), Expect = 9.5
Identities = 20/90 (22%), Positives = 41/90 (45%)
Frame = -3
Query: 475 SKEVSSINKILLSSESVFFPTVSQVLKLSGIFVGLLWCSDFASSESYFCSTIDVSSPDES 296
S+ S ++L SS S+ T+S +++ G+ + +LW S STI + +
Sbjct: 393 SENEPSRRRLLPSSRSIM-TTISSKVQIKGLTLPILWLSSHVLFGVCMLSTIFLQT---- 447
Query: 295 LTSKVPPKLA*LSVGWLSSLICPFVVLAPE 206
+ + +A + W +L P+ + + E
Sbjct: 448 -SWQAQAMVAICGLSWACTLWIPYSLFSSE 476
>SPAC977.03 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 145
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 502 FHSLKNQIYSKEVSSINKILLSSESVFFPTVSQVLK 395
FHS+ N + +S++ I S SVF S+ K
Sbjct: 84 FHSILNSDHEPHTASLSHICHSDSSVFLRAFSETNK 119
>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 336 YDSEDAKSEHHRRPTKIPLNFRT 404
YD + K+E H RP K+P N T
Sbjct: 262 YDFQK-KAEAHERPDKMPCNLHT 283
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,976
Number of Sequences: 5004
Number of extensions: 46866
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -